Locus 1770

Sequence ID 2R_DroMel_CAF1
Location 6,625,089 – 6,625,189
Length 100
Max. P 0.589579
window2947

overview

Window 7

Location 6,625,089 – 6,625,189
Length 100
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 97.00
Mean single sequence MFE -14.83
Consensus MFE -12.90
Energy contribution -12.93
Covariance contribution 0.03
Combinations/Pair 1.08
Mean z-score -1.39
Structure conservation index 0.87
SVM decision value 0.11
SVM RNA-class probability 0.589579
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6625089 100 - 20766785
UGGACCGACAAACAUAAAUUUCCAUUACAAUUGCACAAACGUCACAUUAGACGCUAUCAAGGCGCAAUUUGCAGCGUCUACUAAAUCAAUAAGCCAAACU
(((...(((.......((((........))))........)))....((((((((..((((......)))).)))))))).............))).... ( -15.56)
>DroSec_CAF1 177174 100 - 1
UAGACCGACAAACAUAAAUUUCCAUUACAAUUGCACAAACGUCACAUUAGACGCUAUCAAGGCGCAAUUUGCAGCGUCUACUAAAUCAAUAAGCCAAACU
((((((..(((..................(((((......(((......)))(((.....)))))))))))..).))))).................... ( -14.36)
>DroSim_CAF1 164864 100 - 1
UAGACCGACAAACAUAAAUUUCCAUUACAAUUGCACAAACGUCACAUUAGACGCUAUCAAGGCGCAAUUUGCAGCGUCUACUAAAUCAAUAAGCCAAACU
((((((..(((..................(((((......(((......)))(((.....)))))))))))..).))))).................... ( -14.36)
>DroEre_CAF1 175504 100 - 1
GAGACCGACAAACAUAAAUUUCCAUUACAAUUGCACAAACGUCACAUUAGACGCUAUCAAGGCGCAAUUUGCAGCGUCUACUAAAUCAAUAAGCCAAACU
................................((.....((((......))))......((((((........)))))).............))...... ( -13.80)
>DroYak_CAF1 184952 100 - 1
UGGACCGACAAACAUAAAUUUCCAUUACAAUUGCACAAACGUCACAUUAGACGCUAUCAAGGCGCAAUUUGCAGCGUCUACUAAAUCAAUAAGCCAAACU
(((...(((.......((((........))))........)))....((((((((..((((......)))).)))))))).............))).... ( -15.56)
>DroAna_CAF1 191948 98 - 1
--AACCGACAAACAUAAAUUUCCAUUUCAAAUGCACAAAUGUCACAUUAGACGCUAUCAAAGCGCAAUUUGCAGCGUCUACUAAAUCAAUAAGCCAAACU
--....((((.......((((.......)))).......))))....((((((((..((((......)))).)))))))).................... ( -15.34)
>consensus
UAGACCGACAAACAUAAAUUUCCAUUACAAUUGCACAAACGUCACAUUAGACGCUAUCAAGGCGCAAUUUGCAGCGUCUACUAAAUCAAUAAGCCAAACU
................................((.....((((......))))......((((((........)))))).............))...... (-12.90 = -12.93 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:46 2006