Locus 1768

Sequence ID 2R_DroMel_CAF1
Location 6,610,536 – 6,610,627
Length 91
Max. P 0.996925
window2944

overview

Window 4

Location 6,610,536 – 6,610,627
Length 91
Sequences 4
Columns 98
Reading direction reverse
Mean pairwise identity 72.80
Mean single sequence MFE -24.12
Consensus MFE -13.24
Energy contribution -12.30
Covariance contribution -0.94
Combinations/Pair 1.27
Mean z-score -2.60
Structure conservation index 0.55
SVM decision value 2.77
SVM RNA-class probability 0.996925
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6610536 91 - 20766785
-GUGCGUCUGCUACAAUAGAUGCUGCUCAUAUAUGUACAUAUGUAUGUAAGUACGUACGUACUC------GUAUUCGUAUUCCUAUUCGUAUGUGGCG
-..(((((((......))))))).((.((((((((...(((((.(((..(((((....))))).------.))).))))).......)))))))))). ( -27.90)
>DroSec_CAF1 162833 73 - 1
-GAGCGUCUGCUACAAUAGAUGCUGCUCAUAUA--------UGUAUGUAAGUACGUACAUAUUC------CU----------CUAUUCGUAUGUGGCG
-.((((((((......))))))))((.((((((--------((((((((......))))))...------..----------.....)))))))))). ( -20.90)
>DroSim_CAF1 149679 74 - 1
UGUGCGUCUGCUACAAUAGAUGCUGCUCAUAUA--------UGUAUGUAAGUACGUACGUAUUC------CU----------CUAUUCGUAUGUGGCG
...(((((((......))))))).((.((((((--------((.(((..(((((....))))).------..----------.))).)))))))))). ( -20.40)
>DroEre_CAF1 161812 86 - 1
-GUGUGUCUGCUACAUUAGAUG---CUCAUAUA--------CGUACGGAUUCGGAUUCGUAUUCGUAUUCGUAUUCGUACUGCUAUUCGUAUGUGGCG
-((((((..((..........)---)..)))))--------)((((((((.(((((.((....)).))))).)))))))).(((((......))))). ( -27.30)
>consensus
_GUGCGUCUGCUACAAUAGAUGCUGCUCAUAUA________UGUAUGUAAGUACGUACGUAUUC______CU__________CUAUUCGUAUGUGGCG
.........((((((...((......))..............(((((((......))))))).............................)))))). (-13.24 = -12.30 +  -0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:43 2006