Locus 176

Sequence ID 2R_DroMel_CAF1
Location 1,433,905 – 1,434,025
Length 120
Max. P 0.695679
window399

overview

Window 9

Location 1,433,905 – 1,434,025
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 85.97
Mean single sequence MFE -42.28
Consensus MFE -28.80
Energy contribution -30.43
Covariance contribution 1.63
Combinations/Pair 1.20
Mean z-score -1.83
Structure conservation index 0.68
SVM decision value 0.34
SVM RNA-class probability 0.695679
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1433905 120 - 20766785
UGUGGAGCCGGCGAUGGUGAGCCAAGGUGCAAUUGCUGCUGCAGUUGUGACAGCGAAGGAAGCGGCGUCUUUUUCAGAGGCUUAUGUUGCACUGGUGGUGGAGUUAGUAAAGUAGACACA
.(((..((((....))))..((((.((((((((.((((((.(..((((....))))..).))))))(((((.....)))))....))))))))..)))).................))). ( -39.60)
>DroSec_CAF1 51090 120 - 1
UGUGGAGCUGACGAUGCUGAGCCAAGGUUCAAUUGCUGCUGCAGUUGCGACAGCGAAGGAAGCGGAGUCUUUUUCAGAGGCUUAUGUUGCACUGGUGGUGGAGUCAGUAAAUUAGACACA
.(((..((((((.....(((((....)))))....(..(..((((.((((((((.......)).(((((((.....))))))).))))))))).)..)..).))))))........))). ( -40.20)
>DroEre_CAF1 50472 117 - 1
UGUGGAGCUGGCGAUGGUG---CGAGCUGCAGUUGCUGCUGCAGCUGCGCCAGCGAAGACAGCGGAGUUUUUUUCAGAGGCUUAUGCUGCACUGGUGGCUGGAGGAGUAAAGUGGACACA
.(((..((((.((.(((((---(.(((((((((....))))))))))))))).))....)))).....(((((((((..(((..((...))..)))..))))))))).........))). ( -48.40)
>DroYak_CAF1 55505 120 - 1
UGUGGAGCUGGUGAUGGUGAGCCAAGGUGCAAUUGCUGCUGCAACUGCGCCAGCGAAGGCAGCGGAGACUUUUUUAGAGGCUUAUGCUGCACUGGGGGUUGAGGUAGUAAAGUAGACACA
.(((...(((.(....(((((((..((((((.((((....)))).)))))).((....))...(....).........)))))))(((((.((........)))))))..).))).))). ( -40.90)
>consensus
UGUGGAGCUGGCGAUGGUGAGCCAAGGUGCAAUUGCUGCUGCAGCUGCGACAGCGAAGGAAGCGGAGUCUUUUUCAGAGGCUUAUGCUGCACUGGUGGUGGAGGUAGUAAAGUAGACACA
.(((..((((((..(((....)))....((((((((....))))))))))))))..(((((((((((((((.....))))))).)))))).)).......................))). (-28.80 = -30.43 +   1.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:16 2006