| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 6,588,672 – 6,588,770 |
| Length | 98 |
| Max. P | 0.745086 |
| Location | 6,588,672 – 6,588,770 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 77.01 |
| Mean single sequence MFE | -24.86 |
| Consensus MFE | -14.58 |
| Energy contribution | -15.08 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.745086 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6588672 98 + 20766785 GGACUCAGGGG-CAGAGGGAG---UGGGCUGGAC-GGGGCUAGAAAGGCCCGAAGA--------GCAGAGUGAAGUAGCUUAAUUGAAGUGAUGCUCAGCAGGAGACAAAG- ...(((..(((-((.......---...(((...(-(((.((....)).))))...)--------)).((((......))))...........))))).....)))......- ( -24.10) >DroSec_CAF1 141277 98 + 1 GGACUCGGGGG-CAGAGGGAG---UGGGCUGAAA-GGGGCUAGAAAGGCCCGAAGA--------GCAGAGUGAAGUGGCUUAAUUGAAGUGAUGCUCAGCAGGAGACAAAG- ...(((.....-..)))....---...(((....-.(((((.....)))))...((--------(((......(((......))).......)))))))).(....)....- ( -23.52) >DroSim_CAF1 127601 98 + 1 GGACUCGGGGG-CAGAGGGAG---UGGGCUGGAA-GGGGCUAGAAAGGCCCGAAGA--------GCAGAGUGAAGUGGCUUAAUUGAAGUGAUGCUCAGCAGGAGACAAAG- ...(((.....-..)))....---...(((....-.(((((.....)))))...((--------(((......(((......))).......)))))))).(....)....- ( -23.52) >DroEre_CAF1 140856 98 + 1 GAAUUCAGCAGGGUGG-AGCA---GGGGGCGGAA-CGGGCUAGAAAGGCCCGAAGA--------GCAGAGUGAAGUGGCUUAAUUGAAGUGAUGCUCAGCAGGAGACAAAG- ............((.(-(((.---....((....-((((((.....))))))....--------))........((.((((.....)))).)))))).)).(....)....- ( -25.90) >DroWil_CAF1 176513 97 + 1 AAAAGCGGUGG-CAGGCAGAAAACGAGGCUGAAACCAAGCCAAAAAGGACCUAAA-----------GGAGUGAAGUGCCUUAAUUGAAGUGAUGCUCA---GGCCACAAGCU ...(((.((((-((((((....((..((((.......))))........((....-----------)).))....)))))...((((........)))---))))))..))) ( -27.20) >DroYak_CAF1 147426 107 + 1 GGAUUCAGAAGGGGGAUGGCU---GGGAAUGAAA-CUGGCUAGAAAGGCCCGAAGAGCAGAAGAGCAGAGUGAAGUGGCUUAAUUGAAGUGAUGCUCAGCAGGAGACAAAG- (..(((......(((.((((.---.(........-)..))))......)))...(((((......((((((......))))...))......)))))....)))..)....- ( -24.90) >consensus GGACUCAGGGG_CAGAGGGAG___GGGGCUGAAA_CGGGCUAGAAAGGCCCGAAGA________GCAGAGUGAAGUGGCUUAAUUGAAGUGAUGCUCAGCAGGAGACAAAG_ ...(((..............................(((((.....))))).............((.((((...((.((((.....)))).)))))).))..)))....... (-14.58 = -15.08 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:26 2006