Locus 1752

Sequence ID 2R_DroMel_CAF1
Location 6,585,450 – 6,585,540
Length 90
Max. P 0.736844
window2920

overview

Window 0

Location 6,585,450 – 6,585,540
Length 90
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 71.08
Mean single sequence MFE -28.66
Consensus MFE -6.66
Energy contribution -7.74
Covariance contribution 1.08
Combinations/Pair 1.07
Mean z-score -1.80
Structure conservation index 0.23
SVM decision value 0.44
SVM RNA-class probability 0.736844
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6585450 90 + 20766785
CCGCCCCGCAGCAGAUGACUGUAUAU---CUAUAGUC--U--AUGGACCCAUGGACCUUAUCGAUAGGACCC-AUU-GCGCUUGGUG----GGCUAAAAAAAG
(((((.((((((((....)))).(((---(.((((((--(--(((....)))))))..))).))))......-..)-)))...))))----)........... ( -27.20)
>DroSec_CAF1 138113 87 + 1
CCGCCCCGCAGCAGAUGACUGUAUAU---CUAUAGUC--U--AUGGACCCAUGGACCUUAUCGAUAGGACCC-ACU-G--CUCGGUG----GGCUAAA-AAAG
..((((((.(((((.((...((.(((---(.((((((--(--(((....)))))))..))).))))..)).)-)))-)--))))..)----)))....-.... ( -28.50)
>DroSim_CAF1 124420 87 + 1
CCGCCCCGCAGCAGAUGACUGUAUAU---CUAUAGUC--U--AUGGACCCAUGGACCUUAUCGAUAGGACCC-ACU-G--CUCGGUG----GGCUAAA-AAAG
..((((((.(((((.((...((.(((---(.((((((--(--(((....)))))))..))).))))..)).)-)))-)--))))..)----)))....-.... ( -28.50)
>DroEre_CAF1 137773 82 + 1
CCGCCCCGCAGCAGAUGACUGUAG-U---CCGU---------ACUAGUCCAUGGACCCUAUCGAUAGGACCC-ACUUG--GGUGGUG----GGCGGCA-ACAG
((((((.((.((((....)))).(-(---((((---------........))))))((((....))))((((-....)--))).)))----)))))..-.... ( -30.00)
>DroAna_CAF1 139996 92 + 1
CAGCCCGACAGCAGAUGAGUGUGUAUGGCCAGUAGUGGCUGAGUAGACUCAUAGUCCU--------GGCCUCAACU-G-GCCUGGAAAAAAAACGUAA-AAAG
..((......))..((((((.((..((((((....))))))..)).))))))..(((.--------((((......-)-))).)))............-.... ( -29.10)
>consensus
CCGCCCCGCAGCAGAUGACUGUAUAU___CUAUAGUC__U__AUGGACCCAUGGACCUUAUCGAUAGGACCC_ACU_G__CUUGGUG____GGCUAAA_AAAG
..(((.(((.((((....))))..............................((.(((.......))).)).............)))....)))......... ( -6.66 =  -7.74 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:21 2006