Locus 1751

Sequence ID 2R_DroMel_CAF1
Location 6,585,110 – 6,585,209
Length 99
Max. P 0.610099
window2919

overview

Window 9

Location 6,585,110 – 6,585,209
Length 99
Sequences 3
Columns 100
Reading direction forward
Mean pairwise identity 88.93
Mean single sequence MFE -18.81
Consensus MFE -17.61
Energy contribution -17.50
Covariance contribution -0.11
Combinations/Pair 1.10
Mean z-score -1.33
Structure conservation index 0.94
SVM decision value 0.16
SVM RNA-class probability 0.610099
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6585110 99 + 20766785
AUAAA-AUUAAUUUAACUUGGAAAACUAAAAUCCAUUGAUUACUGCCUCUGAUUUCUUACAGUGCAUCAAGCUCGAACAGAGCAAACAUCAGGCUCUUAG
.....-..........(((((..............((((((((((..............))))).)))))((((.....)))).....)))))....... ( -15.84)
>DroSec_CAF1 137781 98 + 1
AUCAAAAUGAA--UAGUUUGGAAACCUAAAACCCUUUGAUUUCUGCCUCUGAUUUCUUGCAGUGCAUCAAGCUCUAACAGAGCAAACACCAGGCUCUUAG
...........--.(((((((..............(((((..((((....(....)..))))...)))))((((.....)))).....)))))))..... ( -20.30)
>DroSim_CAF1 124081 98 + 1
AUCAAAAUCAA--UAGUUUGGAAACCUGAAACCUUUUGAUUUCUGCCUCUGAUUUCUUGCAGUGCAUCAAGCUCUAACAGAGCAAACACCAGGCUCUUAG
...........--.(((((((..............(((((..((((....(....)..))))...)))))((((.....)))).....)))))))..... ( -20.30)
>consensus
AUCAAAAUCAA__UAGUUUGGAAACCUAAAACCCUUUGAUUUCUGCCUCUGAUUUCUUGCAGUGCAUCAAGCUCUAACAGAGCAAACACCAGGCUCUUAG
..............(((((((..............((((....(((..(((........))).)))))))((((.....)))).....)))))))..... (-17.61 = -17.50 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:20 2006