Locus 1750

Sequence ID 2R_DroMel_CAF1
Location 6,580,228 – 6,580,328
Length 100
Max. P 0.519921
window2918

overview

Window 8

Location 6,580,228 – 6,580,328
Length 100
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 90.12
Mean single sequence MFE -31.61
Consensus MFE -21.40
Energy contribution -22.00
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -2.28
Structure conservation index 0.68
SVM decision value -0.03
SVM RNA-class probability 0.519921
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6580228 100 - 20766785
GCAUCGGACCAUUGAGUCAUCAGCUGGGUGAAUCCGAAAACGGGAAUAAAAGCCACAUGGCCACAUGGGCACAUGGGCACAUUGCGGCACAAGACCCGUA
...(((((.((((.(((.....))).))))..)))))..(((((.......(((.(((((((.((((....))))))).)).)).)))......))))). ( -36.42)
>DroSec_CAF1 132896 97 - 1
GCAACGGACCAUUGAGUCAUCAGCUGGGUGAAUCCGAAAACGGGAAUAAAAGCCACAUGGCCACAUGAGCACAUGGGCACAUUGCGG---AAGACCCGUA
....((((.((((.(((.....))).))))..))))...(((((.......(((.(((((((....).)).)))))))......(..---..).))))). ( -31.80)
>DroSim_CAF1 119177 97 - 1
GCAACGGACCAUUGAGUCAUCAGCUGGGUGAAUCCGAAAACGGGAAUAAAAGCCACAUGGCCACAUGGGCACAUGGGCACAUUGCGG---AAGACCCGUA
....((((.((((.(((.....))).))))..))))...(((((.......(((.(((((((.....))).)))))))......(..---..).))))). ( -35.20)
>DroEre_CAF1 132686 89 - 1
GCAACGGACCAUUGAGUCAUCAGAUGGGUGAAUCCGAAAGCGGGAAUAAAAGCCACAUGGCCACAUGG--------CCACAUUGCGG---AAUACCCGGC
((..(((((((((((....))).)))).....))))....((((.......((....(((((....))--------)))....))..---....)))))) ( -26.32)
>DroYak_CAF1 139243 97 - 1
GCAUCGGACCAUUGAGUCAUCAGAUGGGUGAAUCCGAAAACGGGAAUAAAAGCCACAUGACCACAUGGGCACUAUGCCACAUUGCGG---AAGACCCGGA
...((((((((((((....))).)))).....)))))...((((.......(((.((((....))))))).((.(((......))).---.)).)))).. ( -28.30)
>consensus
GCAACGGACCAUUGAGUCAUCAGCUGGGUGAAUCCGAAAACGGGAAUAAAAGCCACAUGGCCACAUGGGCACAUGGGCACAUUGCGG___AAGACCCGUA
....(((.(((((((....)))).)))(((..((((....)))).......(((.((((....))))))).......)))...............))).. (-21.40 = -22.00 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:19 2006