| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 1,432,924 – 1,433,044 |
| Length | 120 |
| Max. P | 0.609002 |
| Location | 1,432,924 – 1,433,044 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 87.78 |
| Mean single sequence MFE | -38.17 |
| Consensus MFE | -29.43 |
| Energy contribution | -29.43 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.609002 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1432924 120 + 20766785 CACAGAAGUUGUGCUCACCCACCAGCUGGCCAAGAAGCCGGCUAGUGUGCAGCGCAAGCCGAACCAGCCACAUCGAGUGAAAAAGCCUAACGGUAAUGGUACAACUCAAACUACAUCUCA ....((.(((((((((((.(((.(((((((......))))))).)))....((....)).................))))....(((....)))....)))))))))............. ( -37.10) >DroEre_CAF1 49473 120 + 1 CACCGAAGUUGUGCUUACCAACCAGCUAGCCAAGAAGCCGGCCAGUGUGCAGCGCAAGCCGAUCCUGCCACACCGGGUGAAAAAGCCUAACGGUGAUGGUACAGCGGAAACUACAUCCCA ....(.((((((((((((..((..((..((......))..))..))))).)))))...(((....(((((((((((((......)))...))))).)))))...))).)))).)...... ( -35.50) >DroYak_CAF1 54530 120 + 1 CGCCGAGGUUGUGCUUACACACCAGCUAGCCAAAAAGCCGGCUAGUGUGGAGCGCAAGCCAAACCAGCCACAUCGAGUAAAAAAGCCUAACGGUGAUGGUACAGCGGGAACUACAUCUCA .((.(.((((((((((.(((((.(((..((......))..))).))))))))))).))))......(((((((((.((......))....))))).)))).).))((((......)))). ( -41.90) >consensus CACCGAAGUUGUGCUUACCCACCAGCUAGCCAAGAAGCCGGCUAGUGUGCAGCGCAAGCCGAACCAGCCACAUCGAGUGAAAAAGCCUAACGGUGAUGGUACAGCGGAAACUACAUCUCA ..(((...((((((((((......(((((((........)))))))))).))))))).........(((((((((.((......))....))))).))))....)))............. (-29.43 = -29.43 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:14 2006