Locus 1749

Sequence ID 2R_DroMel_CAF1
Location 6,577,767 – 6,577,857
Length 90
Max. P 0.711570
window2917

overview

Window 7

Location 6,577,767 – 6,577,857
Length 90
Sequences 3
Columns 91
Reading direction forward
Mean pairwise identity 87.92
Mean single sequence MFE -11.80
Consensus MFE -11.03
Energy contribution -11.03
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.39
Structure conservation index 0.94
SVM decision value 0.38
SVM RNA-class probability 0.711570
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6577767 90 + 20766785
ACACUGCAAUGGAUCAACUCAAGUGAUUUUGUGUUGUACUAUAUGC-CUCCCUUCAAUUACAAAAAAAAAAAAAACGAAAAAGCAAAAAAU
.....(((((((..((((.((((....)))).))))..)))).)))-............................................ ( -10.70)
>DroSec_CAF1 130467 83 + 1
ACACUGCAAUGGAUCAACUCAAGUGCUUUUGUGUUGUACUAUAUGCACACCCUUCAAUCACAAAAAC--GAAAAUCGAAA------AAACU
....((((((((..((((.((((....)))).))))..)))).))))...................(--(.....))...------..... ( -12.60)
>DroSim_CAF1 116762 83 + 1
ACACUGCAAUGGAUCAACUCAAGUGCUUUUGUGUUGUACUAUAUGCACACCCUUCAAUCACAAAAAC--GAAAAACGAAA------AAACU
....((((((((..((((.((((....)))).))))..)))).))))....................--...........------..... ( -12.10)
>consensus
ACACUGCAAUGGAUCAACUCAAGUGCUUUUGUGUUGUACUAUAUGCACACCCUUCAAUCACAAAAAC__GAAAAACGAAA______AAACU
.....(((((((..((((.((((....)))).))))..)))).)))............................................. (-11.03 = -11.03 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:18 2006