| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 6,571,499 – 6,571,592 |
| Length | 93 |
| Max. P | 0.560265 |
| Location | 6,571,499 – 6,571,592 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 73.72 |
| Mean single sequence MFE | -24.58 |
| Consensus MFE | -14.42 |
| Energy contribution | -16.09 |
| Covariance contribution | 1.67 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.560265 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6571499 93 + 20766785 AAGGCCAAAGGACUUAGUGUU--UUAUGGCCAAGUCAG----CCAGCCAACGAUGAGUACUCACUUUGGACC------C----ACCGCCCACUCUGCCCGCUCAUUUUU-- ..((((((((.(((((.((((--...((((.......)----)))...)))).))))).....)))))).))------.----..........................-- ( -21.70) >DroSec_CAF1 124219 99 + 1 AAGGCCAAAGGACUUAGUGUU--UUAUGGCCAACUCAGCCAGCCAGCCAACGCUGAGUACUCACUUUGGACC------C----ACCGCCCACUCUGUCCGCUCAUUUUUGU ..((((((((.((((((((((--...((((...........))))...)))))))))).....)))))).))------.----............................ ( -27.30) >DroSim_CAF1 110643 99 + 1 AAGGCCAAAGGACUUAGUGUU--UUAUGGCCAACUCAGCCAGCCAGCCAACGCUGAGUACUCACUUUGGACC------C----ACCGCCCACUCUGUUCGCUCAUUUUUGU ..((((((((.((((((((((--...((((...........))))...)))))))))).....)))))).))------.----............................ ( -27.30) >DroEre_CAF1 124414 77 + 1 AAGGCCAAAGGACUUAGUGUUUUUUAUGGCCAAGUCAG----CCAGCCAACGCUGAGUACUCACU----------------------------CUGCCCACUCAUUUCU-- ..((.((.((.((((((((((.....((((.......)----)))...)))))))))).....))----------------------------.)).))..........-- ( -20.80) >DroYak_CAF1 130112 97 + 1 AAGGCCAAAGGACUUAGUGCU--UUAUGGCCCAGUCAG----CCAGCCAACGCUGAGUACUCACUUUGGACCUCCG--C----UCUGCCCGUUCUGCCCGCUCAUUUUU-- .(((((((((.((((((((..--...((((.......)----))).....)))))))).....)))))).)))..(--(----...((.......))..))........-- ( -27.00) >DroPer_CAF1 118598 99 + 1 AAGGCCAAAGGACUUGGUGUU--UUAUGGCCGAAACU-----CCAAAGAGAGCCGAGCACUUACUUGU-AUCUAUAUCCAGAUACUGCCCC--CUGCCCCCUGCCCCGU-- ..(((..(((..((((((.((--((.(((........-----))).)))).))))))..)))....((-((((......)))))).)))..--................-- ( -23.40) >consensus AAGGCCAAAGGACUUAGUGUU__UUAUGGCCAAGUCAG____CCAGCCAACGCUGAGUACUCACUUUGGACC______C____ACCGCCCACUCUGCCCGCUCAUUUUU__ ..((((((((.((((((((((.....(((.............)))...)))))))))).....)))))).))....................................... (-14.42 = -16.09 + 1.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:17 2006