Locus 1743

Sequence ID 2R_DroMel_CAF1
Location 6,560,617 – 6,560,711
Length 94
Max. P 0.999715
window2908

overview

Window 8

Location 6,560,617 – 6,560,711
Length 94
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 93.92
Mean single sequence MFE -24.58
Consensus MFE -23.44
Energy contribution -23.55
Covariance contribution 0.11
Combinations/Pair 1.04
Mean z-score -2.35
Structure conservation index 0.95
SVM decision value 3.94
SVM RNA-class probability 0.999715
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6560617 94 + 20766785
AUGACCAUCUAUUAGCACGCCUCAAGGUUGGCAAACAGCCGAAGAAAAUAAGAAAACUCUUCAUUGUUUUCG-UUUCUGUUUGCUUUAGUGUUUG
.............((((((((....))).(((((((((.....(((((((((((.....))).)))))))).-...)))))))))...))))).. ( -25.00)
>DroSec_CAF1 113280 94 + 1
AUGACCAUCUAUUAGCACGCCUCAAGGUUGGCAAACAGCCGAAGAAAAUAAGAAAACUCUUCAUUGUUUUCG-UUUUUGUUUGCUUUAGUGUUUG
.............((((((((....))).(((((((((.....(((((((((((.....))).)))))))).-...)))))))))...))))).. ( -22.80)
>DroSim_CAF1 99446 94 + 1
AUGACCAUCUAUUAGCACGCCUCAAGGUUGGCAAACAGCCGAAGAAAAUAAGAAAACUCUUCAUUGUUUUCG-UUUCUGUUUGCUUUAGUGUUUG
.............((((((((....))).(((((((((.....(((((((((((.....))).)))))))).-...)))))))))...))))).. ( -25.00)
>DroEre_CAF1 113924 94 + 1
AUGACCAUCUAUUAGCACGCCUCAAGGUUGGCAAACAGCCGAAGAAAAUAAGAAAACUCUUCAUUGUUUUCG-UUACUGUUUGCUUUAGUGUUUG
.............((((((((....))).(((((((((.....(((((((((((.....))).)))))))).-...)))))))))...))))).. ( -25.00)
>DroYak_CAF1 119035 94 + 1
AUGACCAUCUAUUAGCACGCCUCAAGGUUGGCAAACAGCCGAAGAAAAUAAGAAAACUCUUCAUUGUUUUCG-UUUCUGUUUGCUUUAGUGUUUG
.............((((((((....))).(((((((((.....(((((((((((.....))).)))))))).-...)))))))))...))))).. ( -25.00)
>DroAna_CAF1 113891 95 + 1
AUAAAGCUCUAUUAGCACUCCCCAAGGUUAGCAAACAGUUGAAGAAAAUAAGAAAACUUUUCAUUGUUUUCGGCUAUUGUUUGCCGUAGUGUUUG
...((((.((((((((.((.....))))))(((((((((.(..(((((((((((.....))).))))))))..).))))))))).)))).)))). ( -24.70)
>consensus
AUGACCAUCUAUUAGCACGCCUCAAGGUUGGCAAACAGCCGAAGAAAAUAAGAAAACUCUUCAUUGUUUUCG_UUUCUGUUUGCUUUAGUGUUUG
.............((((((((....))).(((((((((.....(((((((((((.....))).)))))))).....)))))))))...))))).. (-23.44 = -23.55 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:10 2006