Locus 174

Sequence ID 2R_DroMel_CAF1
Location 1,432,684 – 1,432,804
Length 120
Max. P 0.586397
window397

overview

Window 7

Location 1,432,684 – 1,432,804
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 95.56
Mean single sequence MFE -44.67
Consensus MFE -43.19
Energy contribution -43.20
Covariance contribution 0.01
Combinations/Pair 1.07
Mean z-score -1.50
Structure conservation index 0.97
SVM decision value 0.11
SVM RNA-class probability 0.586397
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1432684 120 - 20766785
GGCUGCAUGUGCACGAGCUCAAAAUGUGGCAUAUUUGCGGCAACCUGCUGGUAUUGCUGCAUUCCCGUGUACACGGACUCCAUUGGGUCCAGCUCCUCCUGCACCACCUGCGGAGUUACA
((((...((((((((.(((........))).....((((((((((....)))..)))))))....)))))))).((((((....)))))))))).((((.(((.....)))))))..... ( -45.50)
>DroEre_CAF1 49233 120 - 1
GGCUGCAUGUGCACGAGCUCAAAGUGUGGCAUAUUCGCGGCGACCUGCUGGUAUUGCUGCAUGCCCGUGUACACGGACUCCAUUGGGUCCAGCUCCUCCUGCACCACCUGCGGAGUUACA
((((...((((((((.((.....(((..((((((..((((....))))..))).)))..))))).)))))))).((((((....)))))))))).((((.(((.....)))))))..... ( -47.70)
>DroYak_CAF1 54290 120 - 1
GGCUGCAUGUGCCCGAGCUCAAAAUGUGGCAUAUUCGCGGCGACCUGCUGGUAUUGCUGCAUGCCCGUGUACACGGACUCCAUAGGGUCUAGCUCCUCUUGCACCACCUGCGGAGUUACA
.((((((((((((...((.......)))))))))..)))))(((((..(((....((.....))((((....))))...)))..)))))(((((((....(((.....)))))))))).. ( -40.80)
>consensus
GGCUGCAUGUGCACGAGCUCAAAAUGUGGCAUAUUCGCGGCGACCUGCUGGUAUUGCUGCAUGCCCGUGUACACGGACUCCAUUGGGUCCAGCUCCUCCUGCACCACCUGCGGAGUUACA
((((...((((((((.((.....(((..((((((..((((....))))..))).)))..))))).)))))))).((((((....)))))))))).((((.(((.....)))))))..... (-43.19 = -43.20 +   0.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:13 2006