| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 6,521,536 – 6,521,635 |
| Length | 99 |
| Max. P | 0.971662 |
| Location | 6,521,536 – 6,521,635 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 72.80 |
| Mean single sequence MFE | -16.01 |
| Consensus MFE | -11.35 |
| Energy contribution | -11.72 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.71 |
| SVM decision value | 1.68 |
| SVM RNA-class probability | 0.971662 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6521536 99 + 20766785 ACAGGCAAUUUGUUGCAUGGCAUCAAAUAUGCAAUAAAUCUAACUGCUAAAUCAACAA-----ACAACUGCAACGCACCACAGAAGGGCAGACAUUCGAAUGGA .((..(.((((((((((((........))))))))))))....((((...........-----.....(((...)))((......))))))......)..)).. ( -19.80) >DroVir_CAF1 68263 83 + 1 GUAAGCAAUUUGCUCCAUGACAUCAAAUAUGCAAUAAAUCUAACUGCUAAACCAACAAUAAAAAUAACUAAAAUAUGCAGCUG--------------------- ....((((((((...........))))).)))...........((((.............................))))...--------------------- ( -6.25) >DroSec_CAF1 88509 99 + 1 ACAGGCAAUUUGUUGCAUGGCAUCAAAUAUGCAAUAAAUCUAACUGCUAAAUCAACAA-----ACAACUGCAACGCACCACAGAAGGGCAGACAUUCGAAUGGA .((..(.((((((((((((........))))))))))))....((((...........-----.....(((...)))((......))))))......)..)).. ( -19.80) >DroWil_CAF1 111369 90 + 1 CUAGGCAAUUUGUUGCAUGGCAUCAAAUAUGCAAUAAAUCUAACUGCUAAAUCAACAACAGCAACAACUGCAACAUACCAA--ACGAGCAAA------------ ...((((((((((((((((........)))))))))))).....))))............(((.....)))..........--.........------------ ( -16.60) >DroYak_CAF1 93130 99 + 1 ACAGGCAAUUUGUUGCAUGGCAUCAAAUAUGCAAUAAAUCUAACUGCUAAAUCAACAA-----ACAACUGCAACGCACCACAGAAGGGCAGGCAUUCGCAUAGA ...((((((((((((((((........)))))))))))).....))))..........-----.....(((...((.((......))))..))).......... ( -21.10) >DroMoj_CAF1 75260 83 + 1 GCAGGCAAUUUGUUCCAUGACAUCAAAUAUGCAAUAAAUCUAACUGCUAAAUCAACAAUAAGAAAUUUUGCAUGAAGCAACUG--------------------- ((((...(((((((.((((........)))).)))))))....))))....................((((.....))))...--------------------- ( -12.50) >consensus ACAGGCAAUUUGUUGCAUGGCAUCAAAUAUGCAAUAAAUCUAACUGCUAAAUCAACAA_____ACAACUGCAACACACCACAGAAGGGCAGA____________ ...((((((((((((((((........)))))))))))).....))))........................................................ (-11.35 = -11.72 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:59 2006