Locus 1733

Sequence ID 2R_DroMel_CAF1
Location 6,519,815 – 6,519,905
Length 90
Max. P 0.814734
window2897

overview

Window 7

Location 6,519,815 – 6,519,905
Length 90
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 82.89
Mean single sequence MFE -16.02
Consensus MFE -12.70
Energy contribution -12.57
Covariance contribution -0.14
Combinations/Pair 1.08
Mean z-score -2.05
Structure conservation index 0.79
SVM decision value 0.66
SVM RNA-class probability 0.814734
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6519815 90 - 20766785
AGCUGCUGCUGAGU-UUCAAAAAACAAUCAGAGAAAUGGCAAAUUGCACAUUUCCGCAUGUAAAUGCACACACACACACACACACUUUAA-----A
........((((((-((....))))..)))).((((((((.....)).)))))).((((....)))).......................-----. ( -15.10)
>DroPse_CAF1 85447 84 - 1
--------CAGAGUUUUCAAAAAACAAUCAGAGAGAUGGCAAAUUGCACAUUUCCGCAUGGAAAUGCACACAG----ACACAGACACAGACACAGA
--------....((((((............(.((((((((.....)).)))))))((((....)))).....)----)...))))........... ( -15.40)
>DroSim_CAF1 72316 86 - 1
AGCUGCUGCUGAGU-UUCAAAAAACAAUCAGAGAAAUGGCAAAUUGCACAUUUCCGCAUGUAAAUGCACACA----CACACACACUUUAA-----A
........((((((-((....))))..)))).((((((((.....)).)))))).((((....)))).....----..............-----. ( -15.10)
>DroEre_CAF1 88025 85 - 1
AGCUGCUGCUGAGU-UUCAA-AAACAAUCAGAGAAAUGGCAAAUUGCACAUUUCCGCAUGUAAAUGCACACAC----ACACACACAUAAA-----A
(((....)))....-.....-.........(.((((((((.....)).)))))))((((....))))......----.............-----. ( -14.40)
>DroYak_CAF1 91369 82 - 1
AGCUGCUGCUGAGU-UUCAAAAAACAAUCAGAGAAAUGGCAAAUUGCACAUUUCCGCAUGUAAAUGCGCACAC--------ACACUGAAA-----A
(((....)))..((-((....))))..((((.((((((((.....)).))))))(((((....))))).....--------...))))..-----. ( -19.80)
>DroAna_CAF1 86655 82 - 1
AGCCGGAACCGAGU-UUCAAAAAACAAUCAGAGAAAUGGCAAAUUGCACAUUUCCGCAUGUAAAUGCACUCAC----ACACACACC---------C
..........((((-...............(.((((((((.....)).)))))))((((....))))))))..----.........---------. ( -16.30)
>consensus
AGCUGCUGCUGAGU_UUCAAAAAACAAUCAGAGAAAUGGCAAAUUGCACAUUUCCGCAUGUAAAUGCACACAC____ACACACACUUAAA_____A
..............................(.((((((((.....)).)))))))((((....))))............................. (-12.70 = -12.57 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:59 2006