| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 6,514,004 – 6,514,123 |
| Length | 119 |
| Max. P | 0.715325 |
| Location | 6,514,004 – 6,514,123 |
|---|---|
| Length | 119 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.25 |
| Mean single sequence MFE | -24.18 |
| Consensus MFE | -15.54 |
| Energy contribution | -15.85 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.715325 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6514004 119 + 20766785 UCGUUCAGUGUGUGCU-UAAGUGUUUGUCUAACAUUUUGUGGCUUAUAACUAUCAUGGCUUAUGAUAUUGACCCAAAACAUGUUUAACAACGCAUUUUGUCUGUGCACAAAAACCGAAAA (((.....((((..(.-.((((((((((..(((((.((.(((.(((....(((((((...))))))).))).))).)).)))))..)))).)))))).....)..)))).....)))... ( -28.50) >DroPse_CAF1 79030 107 + 1 UCUUCC-------------AGUGCUUGUCUAACAUUUUGUGGCUUAUAACUAUCAUGGCUUAUGAUAUUGACCCAAAACAUGUUUAACAACGCAUUUUGUCUGAGCACAAGAGCCGAGAA ......-------------(((((((((..(((((.((.(((.(((....(((((((...))))))).))).))).)).)))))..)))).)))))...(((..((......))..))). ( -21.80) >DroGri_CAF1 56007 105 + 1 --G--CCGUGUUAUCG-GAAGUGUUUGUUUAACAUUUUGUGGCUUACAACUAUCAUGGCUUUUGAUAUUGACCCGAAACAUGUUUAACAACGCAUUUUGUCUGA----------UGGUAA --.--...((..((((-((((((((((((.(((((((((.((....(((.(((((.......)))))))).))))))..))))).))))).)))))...)))))----------)..)). ( -23.60) >DroWil_CAF1 102439 115 + 1 UCUUUCUCUGUCUGCUUUAAGUGUUUGUCUAACAUUUUGUGGCUUAUAACUAUCAUGGCUUAUGAUAUUGACCCAAAACAUGUUUAACAACGCAUUUUGUCUGCG-ACAU----ACAAAA ........((((.((...((((((((((..(((((.((.(((.(((....(((((((...))))))).))).))).)).)))))..)))).)))))).....)))-))).----...... ( -23.50) >DroMoj_CAF1 67829 107 + 1 --CCUCAAUGACAACA-GAAGUGCUUGUCUAACAUUUUGUCGGUUACAAAUAUCAAGGCUUAUGAUAUUGACCCAAAGCAUGUUUAACAACGCAUUUUGUCUAA----------AGGAAA --(((....(((((..-..(((((((((..(((((((((..(((((...((((((.......)))))))))))))))..)))))..)))).))))))))))...----------)))... ( -25.90) >DroPer_CAF1 76861 107 + 1 UCUUCC-------------AGUGCUUGUCUAACAUUUUGUGGCUUAUAACUAUCAUGGCUUAUGAUAUUGACCCAAAACAUGUUUAACAACGCAUUUUGUCUGAGCACAAGAGCCGAGAA ......-------------(((((((((..(((((.((.(((.(((....(((((((...))))))).))).))).)).)))))..)))).)))))...(((..((......))..))). ( -21.80) >consensus UCUUUC__UGU___C___AAGUGCUUGUCUAACAUUUUGUGGCUUAUAACUAUCAUGGCUUAUGAUAUUGACCCAAAACAUGUUUAACAACGCAUUUUGUCUGAG_ACAA____CGAAAA ..................((((((((((..(((((.((.(((.(((....((((((.....)))))).))).))).)).)))))..)))).))))))....................... (-15.54 = -15.85 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:58 2006