| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 6,501,486 – 6,501,576 |
| Length | 90 |
| Max. P | 0.749632 |
| Location | 6,501,486 – 6,501,576 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 78.13 |
| Mean single sequence MFE | -28.22 |
| Consensus MFE | -15.41 |
| Energy contribution | -16.33 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.749632 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6501486 90 - 20766785 -----UUUAAAUGCACUUCAAUACGAGACUCUUGGGGGUCGCAUCCUAGAUCUCUG----GGCCUGCACUUUGUGCAUUUGACGCUGAUUUACACAGC--C -----.((((((((((..........(((((....)))))(((.(((((....)))----))..))).....)))))))))).((((.......))))--. ( -31.50) >DroVir_CAF1 49371 87 - 1 -----CUCGAAUGCAGCUUAAUACGAGACUCUCGG--GUCCUGUC-UGUAU-UGUA--C-GCCCAGUGCUUUGUGCAUUUGACGCUGAUUUAUGCAGG--C -----.(((((((((....(((((.((((......--.....)))-)))))-)(((--(-.....))))....))))))))).((........))...--. ( -22.30) >DroPse_CAF1 65530 96 - 1 -----UUUAAAUGCACUUCAAUACGAGACUCUUGGGGGUCGCAUCCUAGAUCUCUGUGCGAGCUUGCACUUUGUGCAUUUGACGCUGAUUUACACAGCGCC -----.((((((((((........((((.(((.((((......))))))))))).(((((....)))))...))))))))))(((((.......))))).. ( -32.70) >DroMoj_CAF1 56440 88 - 1 -----UUCGAAUGCACUUUAAUUUUAGACUCUCGG--GUCGCAGC-UGUAUCUGUA--C-GCCCAGUGCUUUGUGCACUUGACUGUGAUUUACGCAGG--C -----.((((.(((((..........((((....)--)))(((.(-((........--.-...))))))...))))).))))(((((.....))))).--. ( -24.00) >DroAna_CAF1 68360 95 - 1 UUGGGCUUAAAUGCACUUCAAUACGAGACUCUUGGGGGUCGCAUUCUAGAUCUGUG----GGCUUGCACUUUGUGCAUUUGACGCUGAUUUACACAGC--C ...((((..(((((...((.....))(((((....)))))))))).((((((.(((----....(((((...))))).....))).))))))...)))--) ( -26.60) >DroPer_CAF1 64068 96 - 1 -----UUUAAAUGCACUUCAAUACGAGACUCUUGGGGGUCGCAUCCUAGAUCUCUGUGCGAGCUUGCCCUUUGUGCAUUUGACGCUGAUUUACACAGCGCC -----.((((((((((.......((((.(((.((((((((........))))))))...)))))))......))))))))))(((((.......))))).. ( -32.22) >consensus _____UUUAAAUGCACUUCAAUACGAGACUCUUGGGGGUCGCAUCCUAGAUCUCUG__C_GGCCUGCACUUUGUGCAUUUGACGCUGAUUUACACAGC__C ......((((((((((..........(((((....)))))(((.....................))).....)))))))))).((((.......))))... (-15.41 = -16.33 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:51 2006