Locus 1714

Sequence ID 2R_DroMel_CAF1
Location 6,462,311 – 6,462,406
Length 95
Max. P 0.821694
window2865

overview

Window 5

Location 6,462,311 – 6,462,406
Length 95
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 81.49
Mean single sequence MFE -26.58
Consensus MFE -17.17
Energy contribution -17.17
Covariance contribution 0.00
Combinations/Pair 1.15
Mean z-score -2.30
Structure conservation index 0.65
SVM decision value 0.68
SVM RNA-class probability 0.821694
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6462311 95 + 20766785
GGGUA----------GGGAUA------GCGAGAAAGGUUGAGUAAAGGCAAACGCCAUCAUUCAACUUU---UCCGACACCAACGCAAAAUGCCAAAAGCGCUGCAACCGCAGA
(.((.----------((....------.((.((((((((((((...(((....)))...))))))))))---))))...)).)).).....((.....)).((((....)))). ( -30.30)
>DroSec_CAF1 37911 85 + 1
GGGUA--------------------------GAAAGGUUGAGUAAAGGCAAACGCCAUCAUUCAACUUU---UCCGACACCAACGCAAAAUGCCAAAAGCGCUGCAACCGCAGA
((((.--------------------------((((((((((((...(((....)))...))))))))))---))..)).))..(((............)))((((....)))). ( -27.00)
>DroSim_CAF1 29290 85 + 1
GGGUA--------------------------GAAAGGUUGAGUAAAGGCAAACGCCAUCAUUCAACUUU---UCCGACACCAACGCAAAAUGCCAAAAGCGCUGCAACCGCAGA
((((.--------------------------((((((((((((...(((....)))...))))))))))---))..)).))..(((............)))((((....)))). ( -27.00)
>DroEre_CAF1 36254 84 + 1
U-GGA--------------------------GAAAGGUUCGGUUAAGGCAAACGCCAUCAUUCAACUUU---UGCGACACCAACGCAAAAUGCCAAAAGCGCUGCAACCGCAGA
.-...--------------------------....((((((((...(((....)))..........(((---((((.......))))))).((.....)))))).))))..... ( -18.80)
>DroYak_CAF1 40480 84 + 1
G-GGA--------------------------GAAAGGUUGAGUUAAGGCAAACGCCAUCAUUCAACUUU---UGCGACACCAACGCAAAAUGCCAAAAGCGCUGCAACCGCAGA
(-(.(--------------------------.(((((((((((...(((....)))...))))))))))---)(((.......)))....).)).......((((....)))). ( -24.10)
>DroAna_CAF1 39068 114 + 1
GGAAAUCGGGCCGCAGGGGAAGGUGGUUCGGGGCAAGUUCGGUAAAGGCAAACGCCAUCAUUCAACUUUGUGUCCGACACCAACGCAAAAUGCCAGUAGCGUUGCAACCGCAGA
((...((((((.((((((...(((((((((((.....)))))....(((....)))))))))...))))))))))))...((((((............))))))...))..... ( -32.30)
>consensus
GGGUA__________________________GAAAGGUUGAGUAAAGGCAAACGCCAUCAUUCAACUUU___UCCGACACCAACGCAAAAUGCCAAAAGCGCUGCAACCGCAGA
.................................((((((((((...(((....)))...))))))))))..............(((............)))((((....)))). (-17.17 = -17.17 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:29 2006