Locus 1713

Sequence ID 2R_DroMel_CAF1
Location 6,462,076 – 6,462,176
Length 100
Max. P 0.781419
window2864

overview

Window 4

Location 6,462,076 – 6,462,176
Length 100
Sequences 3
Columns 104
Reading direction forward
Mean pairwise identity 92.88
Mean single sequence MFE -43.47
Consensus MFE -35.73
Energy contribution -36.40
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -2.54
Structure conservation index 0.82
SVM decision value 0.56
SVM RNA-class probability 0.781419
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6462076 100 + 20766785
GGCCAAAGACCAGUGACCGCAGUGACCGGAUCCGGAAACGGCUCACGAUUGGUGGCG-GGUGGUGGCGAAACGGUGGCGAGGUCAAGGGAG---AAGCAGGCCG
((((.....((..(((((...((.((((..((((....))((.(((.(((.(...).-))).)))))))..)))).))..)))))..))..---.....)))). ( -41.90)
>DroSec_CAF1 37673 103 + 1
GGCCAAAGACCAGUGACCGCAGUGACCGGAUCCGGAAACGGCUCCCGAUUGGUGGCG-GGGGGUAGCGAAACGGUGGCGAGGUCAAGGGAGGAGAAGCAGGCCC
((((.....((..(((((...((.((((...(((....)))((((((........))-)))).........)))).))..)))))..)).(......).)))). ( -44.80)
>DroSim_CAF1 29053 102 + 1
GGCCAAAGACCAGUGACCGCAGUGACCGGAUCCGGAAACGGCUGCCGAUUGGUGGCGAGGGGGUAGCGAAACGGUGGCGAGGUCAAGGAAGG--GAGCAGGCCC
((((.....((..(((((...((.((((..((((....))((((((..(((....)))...))))))))..)))).))..))))).))..(.--...).)))). ( -43.70)
>consensus
GGCCAAAGACCAGUGACCGCAGUGACCGGAUCCGGAAACGGCUCCCGAUUGGUGGCG_GGGGGUAGCGAAACGGUGGCGAGGUCAAGGGAGG__AAGCAGGCCC
((((.....((..(((((...((.((((((.(((....))).))....((.((.((......)).)).)).)))).))..)))))..)).(......).)))). (-35.73 = -36.40 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:28 2006