Locus 1710

Sequence ID 2R_DroMel_CAF1
Location 6,459,792 – 6,459,899
Length 107
Max. P 0.664119
window2860

overview

Window 0

Location 6,459,792 – 6,459,899
Length 107
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 90.50
Mean single sequence MFE -27.20
Consensus MFE -22.48
Energy contribution -22.80
Covariance contribution 0.32
Combinations/Pair 1.11
Mean z-score -1.42
Structure conservation index 0.83
SVM decision value 0.28
SVM RNA-class probability 0.664119
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6459792 107 - 20766785
GGCAGAUGCAGUUUGCCGUUUGCUGUUGAAGCUUACAGCUUUCGAUUCACUCUGCCAUUUAGUCGGUUGUUUACUGUUUUCCAGAUUCCGCCUGCUGUUUGAUUUCA
((((((((.((((.((.((..(((.....)))..)).))....)))))).))))))...((((.(((.(..(.(((.....))))..).))).)))).......... ( -26.90)
>DroSec_CAF1 35417 107 - 1
GGCAGAUUCAGUUUGCCGUUUGCUGUCGAAGCUUUCAGCUUUCGACCCACUAUGCCAUUUAGUCGGUUGUUUACUGUUUUCCAGAUUCCGCCUGCUGUUUGAUUUCA
(((((((...))))))).......((((((((.....)).)))))).........((..((((.(((.(..(.(((.....))))..).))).))))..))...... ( -26.80)
>DroSim_CAF1 26785 107 - 1
GGCAGAUGCAGUUUGCCGUUUGCUGUCGAAGCUUACAGCUUUCGACCCACUCUGCCAUUUAGUCGGUUGUUUACUGUUUUCCAGAUUCCGCCUGCUGUUUGAUUUCA
((((((.((((........)))).((((((((.....)).))))))....))))))...((((.(((.(..(.(((.....))))..).))).)))).......... ( -30.00)
>DroEre_CAF1 33770 100 - 1
GGCAGAUGCAGUU-------UACUAUUGAAGCUUACAGCUUUGGAGCCACUCUGCCAUUUAGUCGGUUGUUUACUGUUUUCCAGAUUCCGCCUGCUGUUUGAUUUCA
((((((.((((..-------..)).(..((((.....))))..).))...))))))...((((.(((.(..(.(((.....))))..).))).)))).......... ( -24.90)
>DroYak_CAF1 37433 100 - 1
GGCAGAUGCAGUU-------UGCUGUGAAAGCUUACAGCUAUCGACCCACUCUGCCGUUUAGUCGGUUGUUUACUGUUUUCCAGAUUCCGCCUGCUAUUUGAUUUCA
((((((((..(((-------.(((((((....)))))))....))).)).))))))...((((.(((.(..(.(((.....))))..).))).)))).......... ( -27.40)
>consensus
GGCAGAUGCAGUUUGCCGUUUGCUGUCGAAGCUUACAGCUUUCGACCCACUCUGCCAUUUAGUCGGUUGUUUACUGUUUUCCAGAUUCCGCCUGCUGUUUGAUUUCA
((((((.(((((.........))))).(((((.....)))))........))))))...((((.(((.(..(.(((.....))))..).))).)))).......... (-22.48 = -22.80 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:24 2006