Locus 1700

Sequence ID 2R_DroMel_CAF1
Location 6,432,298 – 6,432,394
Length 96
Max. P 0.593576
window2838

overview

Window 8

Location 6,432,298 – 6,432,394
Length 96
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 91.99
Mean single sequence MFE -15.12
Consensus MFE -12.62
Energy contribution -13.26
Covariance contribution 0.64
Combinations/Pair 1.04
Mean z-score -1.32
Structure conservation index 0.83
SVM decision value 0.12
SVM RNA-class probability 0.593576
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6432298 96 - 20766785
AAAUAAACUCGCAUU----CCAAAUAAGGAAACUCAACCUUAGGUUACUUUAAUUAAAAUCAUAUUAGACAAACCUCAAAUGGCAGCACUUUAUGCUCAC
..........((.((----((......))))..........(((((..((((((.........))))))..)))))......))((((.....))))... ( -12.60)
>DroSec_CAF1 6856 100 - 1
AAAUGAACUCGCACUCGGGCCAAAUAAGGAAACUCAACCUUAGGUUACUUUAAUUAAAAUCAUAUUAGACAAACCUCAAAUGGCAGCACUUUAUGCUCAC
..................((((..(((((........)))))((((..((((((.........))))))..)))).....))))((((.....))))... ( -16.50)
>DroSim_CAF1 6514 100 - 1
AAAUGAACUCGCACUCGGGCCAAAUAAGGAAACUCCACCUUAGUUUACUUUAAUUAAAAUCAUAUUAGACAAACCUCAAAUGGCAGCACUUUAUGCUCAC
..................((((..(((((........)))))((((..((((((.........)))))).))))......))))((((.....))))... ( -13.10)
>DroEre_CAF1 6433 99 - 1
AAAGAGGCUCGCACUCAGGCCAAAUAAGGAAAGUCAACCUUAGGUUACUUUCAUUAAAAUCAUAUUAGACAAACCUCA-AUGGCAGCACUUUAUGCUCAC
...(((.......)))..((((......((((((.((((...))))))))))...............((......)).-.))))((((.....))))... ( -18.90)
>DroYak_CAF1 6645 99 - 1
AAAUAAACUUGCACUCAGGCCGAAUAAGGAAACUCAACCUCAGGUUACUUUAAUUAAAAUCAUAUUAGACAAACCUCA-AUGGCAGCACUUUAUGCUCAU
..................((((....((....)).......(((((..((((((.........))))))..)))))..-.))))((((.....))))... ( -14.50)
>consensus
AAAUAAACUCGCACUCAGGCCAAAUAAGGAAACUCAACCUUAGGUUACUUUAAUUAAAAUCAUAUUAGACAAACCUCAAAUGGCAGCACUUUAUGCUCAC
..................((((..(((((........)))))((((..((((((.........))))))..)))).....))))((((.....))))... (-12.62 = -13.26 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:04 2006