Locus 1697

Sequence ID 2R_DroMel_CAF1
Location 6,424,179 – 6,424,277
Length 98
Max. P 0.517656
window2833

overview

Window 3

Location 6,424,179 – 6,424,277
Length 98
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 79.65
Mean single sequence MFE -24.30
Consensus MFE -12.60
Energy contribution -12.60
Covariance contribution -0.00
Combinations/Pair 1.05
Mean z-score -1.94
Structure conservation index 0.52
SVM decision value -0.03
SVM RNA-class probability 0.517656
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6424179 98 - 20766785
CGGCUCUGUUGCAUAUUUGUUGCAUAAUGCCUUAUAAACUUAUGCACUGGCACAUUGUUGACCAGUUGU-CCGGAAUCUCUACACCGCCAUA---UAUCCCG
.(((..((((((((((((((.((.....))...)))))..))))))((((.((((((.....))).)))-)))).......)))..)))...---....... ( -20.90)
>DroPse_CAF1 4685 93 - 1
CAGCUCUGUUGCAUAUUUGUUGCAUAAUGCC-----AACUUAUGCACUGGCACAUUGUUGACCAGUCGU-CUGGCAUCUGGCAACUGGCAUCAGGCAUC---
..((.(((.(((......(((((...(((((-----(....(((.(((((((......)).))))))))-.))))))...)))))..))).)))))...--- ( -32.90)
>DroSec_CAF1 4578 96 - 1
CGGCUC-GUUGCAUAUUUGUUGCAUAUUGCCUUAUAAACUUAUGCACUGGCACAU-GUUGACCAGUUGU-CCGGAAUCUCUCCAACGCCAUA---UAUCCCG
.(((..-...((((((((((.((.....))...)))))..)))))(((((((...-..)).)))))...-..(((.....)))...)))...---....... ( -20.60)
>DroEre_CAF1 4716 98 - 1
CGGCUCUGUUGCAUAUUUGUUGCAUAAUGCCUUAUAAACUUAUGCACUGGCACAUUGUUGACCAGUUGU-CCGGAAUCUCUCCACCGCCAUA---UAUCCCC
.(((......((((((((((.((.....))...)))))..)))))(((((((......)).)))))...-..(((.....)))...)))...---....... ( -20.80)
>DroAna_CAF1 10650 80 - 1
AAGCUCUGUUGCAUAUUUGUUGCAUAAUGCC-----AACUUAUGCACUGGCACAUUGUUGACCAGUUCCCCCGGAAUCUAUC-----------------UCA
....((((..(((((...(((((.....).)-----))).)))))(((((((......)).))))).....)))).......-----------------... ( -17.30)
>DroPer_CAF1 11705 93 - 1
CAGCUCUGUUGCAUAUUUGUUGCAUAAUGCC-----AACUUAUGCACUGGCACAUUGUUGACCAGUCGU-CUGGCAUCUGGCAACUGGCAACUGGCAUC---
..(((..(((((......(((((...(((((-----(....(((.(((((((......)).))))))))-.))))))...)))))..))))).)))...--- ( -33.30)
>consensus
CAGCUCUGUUGCAUAUUUGUUGCAUAAUGCC_____AACUUAUGCACUGGCACAUUGUUGACCAGUUGU_CCGGAAUCUCUCCACCGCCAUA___UAUCCC_
(((.......(((((...(((((.....))......))).)))))(((((((......)).)))))....)))............................. (-12.60 = -12.60 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:00 2006