Locus 1695

Sequence ID 2R_DroMel_CAF1
Location 6,418,027 – 6,418,130
Length 103
Max. P 0.948083
window2824

overview

Window 4

Location 6,418,027 – 6,418,130
Length 103
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 83.01
Mean single sequence MFE -24.16
Consensus MFE -16.40
Energy contribution -17.64
Covariance contribution 1.24
Combinations/Pair 1.04
Mean z-score -2.51
Structure conservation index 0.68
SVM decision value 1.38
SVM RNA-class probability 0.948083
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6418027 103 + 20766785
-----------GCCCAUGCCAUGCAAUUAUUUGUAUAGGAAUUUAAAUUGAAUGUCAGUCUGUUUGUUUCCAUAACAUACACACUCGCACUCGCA------CUCGCACUCGCACUCUCGC
-----------((.....((((((((....)))))).))..........((.(((.(((.(((.((((.....)))).))).))).))).)))).------...((....))........ ( -20.00)
>DroSec_CAF1 14142 91 + 1
-----------GCCCAUGCCAUGCAAUUAUUUGUAUAGGAAUUUAAAUUGAAUGUCAGUCUGUUUGUUUCCAUAACAUACACACUGGCA------------------CUCGCACUCUCGC
-----------((.....((((((((....)))))).))..........((.(((((((.(((.((((.....)))).))).)))))))------------------.))))........ ( -24.00)
>DroSim_CAF1 16279 91 + 1
-----------GCCCAUGCCAUGCAAUUAUUUGUAUAGGAAUUUAAAUUGAAUGUCAGUCUGUUUGUUUCCAUAACAUACACACUGGCA------------------CUCGCACUCUCGC
-----------((.....((((((((....)))))).))..........((.(((((((.(((.((((.....)))).))).)))))))------------------.))))........ ( -24.00)
>DroEre_CAF1 12717 93 + 1
-----------GCCCAUGCCAUGCAAUUAUUUGUAUAGGAAUUUAAAUUGAAUGUCAGUCUGUUUGUUUCCAUAACACACACAC----------------ACUGCCACUCACACUCUCGC
-----------.......((((((((....)))))).)).........(((.((.((((.(((.(((.........))).))).----------------)))).)).)))......... ( -16.00)
>DroYak_CAF1 13154 120 + 1
CCCAUGCCCAUGCCCAUGCCGUGCAAUUAUUUGUAUAGGAAUUUAAAUUGAAUGUCAGUCUGUUUGUUUCCAUAACAUACACACUGGCACUGGCACUGGCUCUGGCACUCGCACUCUCGC
....((((...(((..((((((((((....))))))................(((((((.(((.((((.....)))).))).)))))))..))))..)))...))))............. ( -36.80)
>consensus
___________GCCCAUGCCAUGCAAUUAUUUGUAUAGGAAUUUAAAUUGAAUGUCAGUCUGUUUGUUUCCAUAACAUACACACUGGCA____________CU__CACUCGCACUCUCGC
...........((.....((((((((....)))))).)).............(((((((.(((.((((.....)))).))).))))))).....................))........ (-16.40 = -17.64 +   1.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:51 2006