Locus 1692

Sequence ID 2R_DroMel_CAF1
Location 6,415,707 – 6,415,827
Length 120
Max. P 0.979629
window2821

overview

Window 1

Location 6,415,707 – 6,415,827
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 96.33
Mean single sequence MFE -32.35
Consensus MFE -30.26
Energy contribution -30.66
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.62
Structure conservation index 0.94
SVM decision value 1.84
SVM RNA-class probability 0.979629
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6415707 120 + 20766785
AUUCAAUUAGGACCCAGACGGGCAAAUAAUAUGCUGCGGUGGCAUGCCGCUCUUCUUAUCCUUUGUCUGCGUGCCGUUCACUAAAAAUGCCGUUAAUAUUUCGCAGCCCGCUUUUCCUCG
........((((...((.(((((....(((((...((((((((((((.((..............))..)))))))(....).......)))))..))))).....)))))))..)))).. ( -33.24)
>DroSec_CAF1 11662 120 + 1
AUUCAAUUAGGACCCAGACGGGCAAAUAAUAUGCUGCGGUGGCAUGCCGCUCUUCUUAUCCUUUGUCUGCGUGCCGCUCACUAAAAAUGCCGUUAAUAUUUCCCAGCCCGCUUUUCCUCG
........((((...((.(((((....(((((...((((((((((((.((..............))..)))))))(....).......)))))..))))).....)))))))..)))).. ( -32.44)
>DroSim_CAF1 13798 120 + 1
AUUCAAUUAGAACCCAGACGGGCAAAUAAUAUGCUGCGGUGGCAUGCCGCUCUUCUUAUCCUUUGUCUGCGUGCCGCUCACUAAAAAUGCCGUUAAUAUUUCCCAGCCCGCUUUUCCUCG
.........(((...((.(((((....(((((...((((((((((((.((..............))..)))))))(....).......)))))..))))).....))))))).))).... ( -28.74)
>DroEre_CAF1 10290 120 + 1
AUUCAAUUAGGAACCAGACGGGCAAAUAAUAUGCUGCGGUGGCAUGCCGCACUUCUUAUCCUUUGUCUGCGUGCCGCUCACUAAAAAUGCCGUUAAUAUUUCCCAGCCCGCUUUUCCACA
.........((((..((.(((((....(((((...((((((((((((.(.((............))).)))))))(....).......)))))..))))).....))))))).))))... ( -34.40)
>DroYak_CAF1 10530 120 + 1
AUUCAAUUAGGACGCAGACGGGCAAAUAAUAUGCUGCGGUGGCAUGCCGCUCUUCUUAUCCUUUGUCUGCGUGCCGCUCACUAAAAAUGCCGUUAAUAUUUCCCAGCCCGCCGUUCCACA
.........(((.((.(.(((((....(((((...((((((((((((.((..............))..)))))))(....).......)))))..))))).....)))))).)))))... ( -32.94)
>consensus
AUUCAAUUAGGACCCAGACGGGCAAAUAAUAUGCUGCGGUGGCAUGCCGCUCUUCUUAUCCUUUGUCUGCGUGCCGCUCACUAAAAAUGCCGUUAAUAUUUCCCAGCCCGCUUUUCCUCG
.........(((...((.(((((....(((((...((((((((((((.((..............))..)))))))(....).......)))))..))))).....)))))))..)))... (-30.26 = -30.66 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:48 2006