Locus 1691

Sequence ID 2R_DroMel_CAF1
Location 6,415,564 – 6,415,667
Length 103
Max. P 0.866041
window2820

overview

Window 0

Location 6,415,564 – 6,415,667
Length 103
Sequences 4
Columns 113
Reading direction forward
Mean pairwise identity 77.83
Mean single sequence MFE -25.82
Consensus MFE -11.02
Energy contribution -12.27
Covariance contribution 1.25
Combinations/Pair 1.21
Mean z-score -3.07
Structure conservation index 0.43
SVM decision value 0.85
SVM RNA-class probability 0.866041
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6415564 103 + 20766785
UUAUUUUCGACACCCAUUGUUAAUGCAAUCAAAAUGUGUUAAGCAUACAUGUAUGUAUGUAUAUAC--------AUAUGU--GCUCCCCAGCUCACGUUUGGUGACCCCGCAA
..........((((.(((((....)))))..(((((((...((((((.((((((((....))))))--------)).)))--)))........)))))))))))......... ( -24.80)
>DroSec_CAF1 11515 107 + 1
UGAAUUUCGUCACCCAUUGUUAAUGCAAUCAAAAUGUGUUAAGCAUACAUGUAUGUACAUACAUAC----AUAUAUGUGU--GCUCCCCAGCUCACGUUUGGUGACCCCGCAA
........((((((.(((((....)))))..(((((((...((((((((((((((((......)))----))))))))))--)))........)))))))))))))....... ( -36.00)
>DroSim_CAF1 13659 99 + 1
UUAUUUUCGUCACCCAUUGUUAAUGCAAUCAAAAUGUGUUAAGCAUAAAUGUAUGUAC------------AUAUAUGUGU--GCUCCCCAGCUCACGUUUGGUGACCCCGCAA
........((((((.(((((....)))))..(((((((...((((((.((((((....------------)))))).)))--)))........)))))))))))))....... ( -25.30)
>DroEre_CAF1 10151 99 + 1
UUAUUUGCGACAC-CAUUUUUAAUGCAAUCAAAAUGUGAUAAACAUAUGUAU------------ACAUAUGUAUUUAUGUAU-UCCCCCAGCACACGUUUUGUGACCCCGUAA
....(((((....-(((.....)))....(((((((((....(((((((...------------.))))))).....(((..-.......))))))))))))......))))) ( -17.20)
>consensus
UUAUUUUCGACACCCAUUGUUAAUGCAAUCAAAAUGUGUUAAGCAUACAUGUAUGUAC______AC____AUAUAUAUGU__GCUCCCCAGCUCACGUUUGGUGACCCCGCAA
........((((((.(((((....)))))..(((((((....(((((.((((..................)))).)))))..((......)).)))))))))))))....... (-11.02 = -12.27 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:47 2006