Locus 169

Sequence ID 2R_DroMel_CAF1
Location 1,428,099 – 1,428,219
Length 120
Max. P 0.997473
window379

overview

Window 9

Location 1,428,099 – 1,428,219
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 97.00
Mean single sequence MFE -27.12
Consensus MFE -24.84
Energy contribution -25.40
Covariance contribution 0.56
Combinations/Pair 1.03
Mean z-score -2.14
Structure conservation index 0.92
SVM decision value 2.87
SVM RNA-class probability 0.997473
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1428099 120 - 20766785
GGCUCACUGAAUCCGAUUGGUGCUUGGUGUCGAAGGACGAUGCAUAAACAUCAAGAAAAAGCUGCAAAGUGGAAUAAAAAACUAAUUAAUGAAAUGUUAAUGAAGGCGAGCGUAAAGAAU
.((((.((...((((....((((((...(((....)))((((......))))......)))).))....))))...........((((((.....))))))...)).))))......... ( -26.60)
>DroSec_CAF1 46553 120 - 1
GGCUCACUGAAUCCGAUUGGUGCUUGGUGUCGAAGGACGCUGCAUAAACAUCAAGAAAAAGCUGCAAAGUGGAAUAAAAAACUAAUUAAUGAAAUGUUAAUGAAGGCGAGCGUAAAGAAU
.((((.((...((((((..((((..((((((....))))))))))....)))........(((....))))))...........((((((.....))))))...)).))))......... ( -28.40)
>DroSim_CAF1 51603 120 - 1
GGCUCACUGAAUCCGAUUGGUGCUUGGUGUCGAAGGACGCUGCAUAAACAUCAAGAAAAAGCUGCAAAGUGGAAUAAAAAACUAAUUAAUGAAAUGUUAAUGAAGGCGAGCGUAAAGAAU
.((((.((...((((((..((((..((((((....))))))))))....)))........(((....))))))...........((((((.....))))))...)).))))......... ( -28.40)
>DroEre_CAF1 44686 119 - 1
GGCUCACUGAAUCCGAUUGGUGCUUAGUGUCGAAGGACGCUGCAUAAACAUCAAGAAAAAGCUGCAAAGUGGAAUAAAAAACUAAUUAAUGAAAUGUUAAUGAAGGCGAGCGAA-AGAAU
.((((.((...((((((..((((..((((((....))))))))))....)))........(((....))))))...........((((((.....))))))...)).))))...-..... ( -28.40)
>DroYak_CAF1 49206 117 - 1
GCCUCACUGAAUCCGAUU---GCUUAGUGUCGAAGGACGCUGCAUAAACAUCAAGAAAAAGCUGCAAAGUGGAAUAAAAAACUAAUUAAUGAAAUGUUAAUGAAGGCGAGCGAAAAGAAU
(((((......((((.((---((.(((((((....)))))))...........((......))))))..))))...........((((((.....))))))).))))............. ( -23.80)
>consensus
GGCUCACUGAAUCCGAUUGGUGCUUGGUGUCGAAGGACGCUGCAUAAACAUCAAGAAAAAGCUGCAAAGUGGAAUAAAAAACUAAUUAAUGAAAUGUUAAUGAAGGCGAGCGUAAAGAAU
.((((.((...((((((..((((..((((((....))))))))))....)))........(((....))))))...........((((((.....))))))...)).))))......... (-24.84 = -25.40 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:57 2006