| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 6,373,957 – 6,374,047 |
| Length | 90 |
| Max. P | 0.712454 |
| Location | 6,373,957 – 6,374,047 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 83.29 |
| Mean single sequence MFE | -33.83 |
| Consensus MFE | -24.17 |
| Energy contribution | -24.82 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.19 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.712454 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6373957 90 + 20766785 AAGCGCAAAUUGCAGUCUAAGCGUUUUUUGCGCAUUGAAAUGGAAACUGCAGCCGGGGAUUCGUGUCGACACUCGUGGUUGCAC--------------CCCCCA ..(((((((.(((.......)))...))))))).......(((....((((((((.((....(((....))))).)))))))).--------------...))) ( -29.30) >DroPse_CAF1 17065 98 + 1 -CGAGCGGUUGGCAGUUAAAGAAUUUUUUGCGCAUCGAAAUGGAAACUGCAGCCGCGGAUUCGUGUCGACACUUGUGGGUGCAG-----UAACCAUAGCACGCC -...((((.((((((..((....))..)))).)).)(..((((..((((((.((((((....(((....))))))))).)))))-----)..))))..).))). ( -31.40) >DroSec_CAF1 14613 90 + 1 AAGCGCAAAUUGCAGUUUAAGCGUUUUUUGCGCAUUGAAAUGGAAACUGCAGCCGCGGAUUCGUGUCGACACUCGUGGGUGCAC--------------CCCCCA ..(((((((..((.((....))))..))))))).......(((....((((.((((((....(((....))))))))).)))).--------------...))) ( -31.20) >DroSim_CAF1 15049 90 + 1 AAGCGCAAAUUGCAGUUUAAGCGUUUUUUGCGCAUUGAAAUGGAAACUGCAGCCGCGGAUUCGUGUCGACACUCGUGGGUGCAU--------------CCCCCA ..(((((((..((.((....))))..)))))))........(((...((((.((((((....(((....))))))))).)))))--------------)).... ( -31.30) >DroEre_CAF1 15991 102 + 1 AAGCGCAAAUUGCAGUUUAAGCGCUUUUUGCGCAUUGAAAUGGAAACUGCAGC-GCGUAUUCGUGUCGACACUCGUGGGUGCAUGAGUGCACCCAU-GCACCCA ..((((....((((((((..((((.....))))..........))))))))))-))......(((....)))...((((((((((.(....).)))-))))))) ( -40.50) >DroYak_CAF1 16090 103 + 1 AAGCGCAAAUUGCAGUUUAAGCGUUUUUUGCGCAUUCAAAUGGAAACUGCAGCUGCGGAUUCGUGUCGACACUCGUGGGUGCAUGAGUGCACCCAU-GCACCCA ..(((((((..((.((....))))..)))))))......((((((.((((....)))).)))(((....))).)))(((((((((.(....).)))-)))))). ( -39.30) >consensus AAGCGCAAAUUGCAGUUUAAGCGUUUUUUGCGCAUUGAAAUGGAAACUGCAGCCGCGGAUUCGUGUCGACACUCGUGGGUGCAU______________CACCCA ..(((((((.(((.......)))...)))))))........(....)((((.((((((....(((....))))))))).))))..................... (-24.17 = -24.82 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:32 2006