Locus 1678

Sequence ID 2R_DroMel_CAF1
Location 6,355,553 – 6,355,645
Length 92
Max. P 0.999231
window2800

overview

Window 0

Location 6,355,553 – 6,355,645
Length 92
Sequences 5
Columns 92
Reading direction reverse
Mean pairwise identity 95.87
Mean single sequence MFE -30.79
Consensus MFE -30.67
Energy contribution -30.43
Covariance contribution -0.24
Combinations/Pair 1.15
Mean z-score -1.92
Structure conservation index 1.00
SVM decision value 3.45
SVM RNA-class probability 0.999231
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6355553 92 - 20766785
CCUGUAAAGAAUCGCAAAUGAAAUCAAAGUUGAGGGCGCCGGACUGGCGAGGUCAUCCAAAGACAAUAGCGACCUGCUCGAUUCCGGUGCCC
.................................(((((((((((.(((.(((((................)))))))).)..)))))))))) ( -29.39)
>DroSec_CAF1 15812 92 - 1
CCUGUAAAGAAUCGCAAAUGAAAUCAAAGUUGAGGGCGCCGGACUGGCGAGGUCAUCCAAAGACAAUAGCGACCUGUUCGGGUCCGGUGCCC
.................................((((((((((((.(..(((((................)))))...).)))))))))))) ( -32.29)
>DroSim_CAF1 18380 92 - 1
CCUGUAAAGAAUCGCAAAUGAAAUCAAAGUUGAGGGCGCCGGACUGGCGAGGUCAUCCAAAGACAAUAGCGACCUGUUCGGGUCCGGUGCCC
.................................((((((((((((.(..(((((................)))))...).)))))))))))) ( -32.29)
>DroEre_CAF1 16020 92 - 1
CCUGUAAAGAAUCGCAAAUGAAAUGAAAGUUGAGGGCGCCGGACUGGCAAGGUCAUCCAAAGACAAUAACGACCAGCUCGGGUUCGGUGCCC
.................................(((((((((((((((..((((................)))).)))..)))))))))))) ( -28.59)
>DroYak_CAF1 16203 92 - 1
CCUGUAAAGAAUCGCAAAUGAAAUCAAAGUUGAGGGCGCCGGACUGGCGAGGUCAUCCAAAGACAAUAACGACCUGCUCGGGUUCGGUGCCC
.................................(((((((((((((((.(((((................))))))))..)))))))))))) ( -31.39)
>consensus
CCUGUAAAGAAUCGCAAAUGAAAUCAAAGUUGAGGGCGCCGGACUGGCGAGGUCAUCCAAAGACAAUAGCGACCUGCUCGGGUCCGGUGCCC
.................................(((((((((((((((.(((((................))))))))..)))))))))))) (-30.67 = -30.43 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:26 2006