Locus 1676

Sequence ID 2R_DroMel_CAF1
Location 6,350,468 – 6,350,561
Length 93
Max. P 0.567787
window2798

overview

Window 8

Location 6,350,468 – 6,350,561
Length 93
Sequences 4
Columns 93
Reading direction reverse
Mean pairwise identity 81.10
Mean single sequence MFE -25.40
Consensus MFE -19.76
Energy contribution -19.82
Covariance contribution 0.06
Combinations/Pair 1.06
Mean z-score -1.50
Structure conservation index 0.78
SVM decision value 0.07
SVM RNA-class probability 0.567787
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6350468 93 - 20766785
UUGACCGCCGGCGGAGCUCAUCCUCCUCCUCCUCCUCUUCAUCCGCUCCAGCUCCUUGCGACCCUUCCGCAUCCAUGUGUACAGUGGAGUCUA
..(((....((.((((......)))).))............((((((...((....((((.......)))).....))....))))))))).. ( -23.20)
>DroSec_CAF1 10771 90 - 1
UUGACCGCCGGCGGAGCUCCUCC---UCCUCCUUCUCCUCAUCCGCUCCAGCUCCUUGCGACCCUUCCGCGUCUAUGUGUACAGUGGAGGCUC
......(((((.((((......)---))).)).........((((((...((....((((.......)))).....))....))))))))).. ( -25.80)
>DroSim_CAF1 11385 84 - 1
UUGACCGCCGGCGGAGCUCCUCC---UCCU------CUCCAUCCGCUCCAGCUUCUUGCGACCCUUCCGCGUCUAUGUGUAUAGUGGAGGCUA
......(((((.((((...))))---.)).------.....((((((...((....((((.......)))).....))....))))))))).. ( -24.80)
>DroEre_CAF1 10890 78 - 1
UUGACCGCCGGCGGAGCUC---------------CUCCUCCGCCGCUCCAGCUCCUCGCGACCCUUCCGCGUCCAUACGUACAGUGGAAGCUC
.....(((.(((((((...---------------...)))))))((....)).....)))...(((((((((.(....).)).)))))))... ( -27.80)
>consensus
UUGACCGCCGGCGGAGCUCCUCC___UCCU____CUCCUCAUCCGCUCCAGCUCCUUGCGACCCUUCCGCGUCCAUGUGUACAGUGGAGGCUA
.....(((.((((((((...........................))))).)))....)))...(((((((.............)))))))... (-19.76 = -19.82 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:24 2006