Locus 1675

Sequence ID 2R_DroMel_CAF1
Location 6,344,514 – 6,344,616
Length 102
Max. P 0.743187
window2797

overview

Window 7

Location 6,344,514 – 6,344,616
Length 102
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 81.11
Mean single sequence MFE -28.08
Consensus MFE -20.32
Energy contribution -20.43
Covariance contribution 0.11
Combinations/Pair 1.13
Mean z-score -1.63
Structure conservation index 0.72
SVM decision value 0.45
SVM RNA-class probability 0.743187
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6344514 102 - 20766785
UUCUUUGUGUUUGUGCUCCUGUACUGGCCGAUACUGCUGAUGAAGUCGUCCUAGGAUUUGGGGAGCUCCAGACUGCAUAUGUCUGGACUCCGUUAAAAAGUC------------------
..((((......((((....))))...((((..(((..((((....)))).)))...))))((((.(((((((.......))))))))))).....))))..------------------ ( -30.00)
>DroVir_CAF1 5299 102 - 1
UUUUUUGUGUUCGUGCUACUAUAUUGGCCCAUAUUGCUGAUGAAAUCGUCCUAGGAUUUGGGGAGUUCCAGAAUACACUUUUCUGGACUCCGUUAAAAAUUC------------------
.((((((.......((((......))))(((.(((...((((....))))....))).)))(((((.((((((.......)))))))))))..))))))...------------------ ( -24.80)
>DroGri_CAF1 5267 120 - 1
UUCUUUGUGUUUGUACUGUUGUAUUGGCCCAUAUUGCUGAUGAAGUCGUCCUAGGAUUUGGGGAGCUCCAGGAUACACAUUUCUGGACUCCGUUAAAAAUCUCAGAAGCAAAAAAAAUAA
.....((.((..((((....))))..)).))..(((((((((....))))((..((((((.((((.(((((((.......))))))))))).)...)))))..)).)))))......... ( -32.70)
>DroWil_CAF1 4650 102 - 1
UUUUUCGUUUUCGUACUUCUGUAUUGGCCUAUUUUGCUCAUGAAGUCCUCCUAGGAUUUGGGGAGUUCAAGACUUCACAUGUCUGGACUCCGUUAAAAAAAU------------------
............((((....))))((((............(.((((((.....)))))).)((((((((.(((.......))))))))))))))).......------------------ ( -23.50)
>DroMoj_CAF1 5188 102 - 1
UUCUUCGUCUUUGUCCUGCUGUAUUGGCCCAUCUUACUGAUGAAGUCCUCCUAGGAUUUGGGGAGUUCCAGAAUACACUUUUCUGGACUCCGUUAAAAAAUC------------------
........((..((((((((.....))).((((.....))))..........)))))..))(((((.((((((.......)))))))))))...........------------------ ( -28.50)
>DroAna_CAF1 4771 102 - 1
UUCUUUGUGUUCGUCCUCCUGUACUGGCCGAUCCUGCUGAUGAAGUCGUCCUAGGAUUUGGGGAGUUCCAGAAUACACAUUUCUGGACUCCGUUAAAAAACC------------------
.................((......))(((((((((..((((....)))).))))).))))(((((.((((((.......)))))))))))...........------------------ ( -29.00)
>consensus
UUCUUUGUGUUCGUACUCCUGUAUUGGCCCAUAUUGCUGAUGAAGUCGUCCUAGGAUUUGGGGAGUUCCAGAAUACACAUUUCUGGACUCCGUUAAAAAAUC__________________
.....................(((((((.......)))))))(((((.......)))))..((((.(((((((.......)))))))))))............................. (-20.32 = -20.43 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:23 2006