Locus 1673

Sequence ID 2R_DroMel_CAF1
Location 6,335,323 – 6,335,413
Length 90
Max. P 0.649852
window2793

overview

Window 3

Location 6,335,323 – 6,335,413
Length 90
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 80.72
Mean single sequence MFE -25.82
Consensus MFE -15.56
Energy contribution -16.20
Covariance contribution 0.64
Combinations/Pair 1.31
Mean z-score -1.85
Structure conservation index 0.60
SVM decision value 0.24
SVM RNA-class probability 0.649852
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6335323 90 + 20766785
CUAGCCGUGUAUGCGCAUGUAUGUGUGCCU--------CACGUAAUGGCGUACCACGUAGUAAUUGUCAUUACAAAUAGAAGUGGGAGUUACCAAAAG
.....(((((((((.(((.((((((.....--------)))))))))))))).))))..((((((.(((((.(.....).))))).))))))...... ( -25.80)
>DroSec_CAF1 5400 90 + 1
CUGGCCGUGUAUGCGCAUGUGUGUGUGCCU--------CACGUAAUGGCGUACCACGUAGUAAUUGUCAUUACAAACAGAAGUGGGAGUUACCAAAAA
(((...(((...((((((....))))))..--------)))((((((((.(((......)))...))))))))...)))...(((......))).... ( -26.40)
>DroSim_CAF1 5407 90 + 1
CUGGCCGUGUAUGCGCAUGUGUGUGUGCCU--------CACGUAAUGGUGUACCACGUAGUAAUUGUCAUUACAAACAAAAGUGGGAGUUACCAAAAA
.....((((...((((((....))))))..--------))))...(((((..((((.......((((....))))......))))....))))).... ( -23.52)
>DroEre_CAF1 5383 90 + 1
CUGAACGUGUAUGCGCCUGUGUGUGUGCCU--------CACGCAAUGGCGUACCACGUAGUAAUUGCUAUUACAAACAGAAGUGGGAGUUACCAAAAA
....(((((..((((((..((((((.....--------))))))..)))))).))))).((((((.(((((.(.....).))))).))))))...... ( -31.40)
>DroYak_CAF1 5352 90 + 1
CUAGACGUGUAUGCGCAUGUGUGUGUGUCU--------CCCGUAAUGGCGUACCACGUAGUAAUUGCCAUUACAAAUAAAUGUGGGAGUUACCAAAAA
....((((((....)))))).((.(((.((--------(((((((((((.(((......)))...))))))))..((....))))))).))))).... ( -27.20)
>DroPer_CAF1 632 92 + 1
-----CAAGUGUUUGCUUGUAUGUGUCCCAUGUACGAGUACGUAAUGGCGUAC-ACGUAGUAAUUACAAUUUCAAAUCAAAAUACUCGUUUGUAAAAC
-----..((((((((((((((((((...)))))))))))..(((((.(((...-.)))....)))))............)))))))............ ( -20.60)
>consensus
CUGGCCGUGUAUGCGCAUGUGUGUGUGCCU________CACGUAAUGGCGUACCACGUAGUAAUUGCCAUUACAAACAAAAGUGGGAGUUACCAAAAA
.....((((..(((((...((((((.............))))))...))))).))))..((((((.(((((.........))))).))))))...... (-15.56 = -16.20 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:20 2006