| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 6,317,289 – 6,317,383 |
| Length | 94 |
| Max. P | 0.650881 |
| Location | 6,317,289 – 6,317,383 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 76.22 |
| Mean single sequence MFE | -37.92 |
| Consensus MFE | -25.92 |
| Energy contribution | -27.00 |
| Covariance contribution | 1.08 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.13 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.650881 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6317289 94 - 20766785 CGCCGGCCAAGCCCAAGGAGAAGGCAGUCAUUGACCUCACAGAUGAGGAUGAUGCAGCGGCUGCGGCGGCGGCUAGGGCUGCCCAAGCACAAA---------A-- .(((((((..(((.........))).(.(((((.(((((....))))).))))))...)))..))))((((((....))))))..........---------.-- ( -35.50) >DroGri_CAF1 72889 91 - 1 CGCCCGCCCGGCCCAAAGAAAAGGCUGUCAUCGAUCUGACUGACGAGGAUGAUGCGGCGGCAGCUGCGGCGGCAGCAGCCGCG------------GAAGCAAC-- .(((.((((((((.........)))))(((((..((........)).)))))...)))))).(((.(.(((((....))))).------------).)))...-- ( -37.20) >DroSec_CAF1 67496 103 - 1 CGCCGGCCAAGCCCAAGGAGAAGGCAGUCAUUGACCUCACAGAUGAGGAUGAUGCAGCGGCUGCGGCGGCGGCAAGGGCUGCCCAAGCACAAAUCGAGGCUAA-- .(((((((..(((.........))).(.(((((.(((((....))))).))))))...))))((...((((((....))))))...)).........)))...-- ( -38.00) >DroEre_CAF1 62727 103 - 1 CGCCGGCCAAGCCCAAGGAGAAGGCAGUCAUUGACCUCACAGAUGAGGAUGAUGCAGCGGCUGCGGCGGCGGCAAGGGCUGCCCAGGCUCAAAUCGAGGCUAA-- .(((((((..(((.........))).(.(((((.(((((....))))).))))))...)))..))))((((((....)))))).((.(((.....))).))..-- ( -40.20) >DroYak_CAF1 88923 103 - 1 CGCCGGCCAAACCCAAGGAGAAGGCGGUCAUAGACCUCACGGAUGAGGAUGAUGCAGCGGCUGCGGCGGCGGCAAGGGCUGCCCAGGCUCAAAUCGAGGCUAA-- ((((..((........))....))))(((((...(((((....))))))))))(((((.(((((....)))))....)))))..((.(((.....))).))..-- ( -38.10) >DroMoj_CAF1 95149 93 - 1 CGCCUGCACGACCCAAAGAGAAGGCCGUCAUCGAUCUCACAGACGAGGAUGAUGCAGCGGCUGCUGCAGCCGCUGCUGCGAUG------------GAUGCCAGCG (((..(((....((........))(((((((((.((((......)))).))))((((((((((...))))))))))...))))------------).)))..))) ( -38.50) >consensus CGCCGGCCAAGCCCAAGGAGAAGGCAGUCAUUGACCUCACAGAUGAGGAUGAUGCAGCGGCUGCGGCGGCGGCAAGGGCUGCCCA_GC_CAAA__GAGGCUAA__ .(((((((..(((.........))).(.(((((.((((......)))).))))))...)))..))))((((((....))))))...................... (-25.92 = -27.00 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:14 2006