| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 6,292,908 – 6,293,010 |
| Length | 102 |
| Max. P | 0.964912 |
| Location | 6,292,908 – 6,293,010 |
|---|---|
| Length | 102 |
| Sequences | 4 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 69.67 |
| Mean single sequence MFE | -27.02 |
| Consensus MFE | -12.56 |
| Energy contribution | -13.30 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.26 |
| Mean z-score | -2.38 |
| Structure conservation index | 0.46 |
| SVM decision value | 1.57 |
| SVM RNA-class probability | 0.964912 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6292908 102 + 20766785 AACAGCCCCCCCCCC-CC-UUUACCGGCAAUACCCCCACUACCGCAUGUGGUUGGUGGGGGUAAAA-UAAUACGGAUUCAACAUCUCAAAUUGAAAAGCCAG--CAG ...............-..-......(((..((((((((((((((....))).)))))))))))...-.........(((((.........)))))..)))..--... ( -30.30) >DroSec_CAF1 35351 88 + 1 AAAAGCCACCCCCAC-CCCCC---------UACC--------CCCUUGUGGUAAGCGGGGGUAAAA-UAAUACGGAUUCAACGUCUCAAAUUGAAAAGCCAGCGCAG ....(((......((-(((((---------((((--------.......))).)).))))))....-......((.(((((.........)))))...)).).)).. ( -20.50) >DroEre_CAF1 36046 84 + 1 UCUGG--ACCCCAAUACCGCA---------CACC--------GCCAUGUGGU--GUUGGGGUAAAUUUAAUACGGAAUCGGCGUCUCGAAUUGAAAAGCCAG--CAG .((((--((((((((((((((---------....--------....))))))--))))))))...((((((.((..((....))..)).))))))...))))--... ( -32.90) >DroYak_CAF1 38860 81 + 1 UCUGG--ACCCCAAUGCCGCA---------CACC--------GCCAUGUGG----UUGGGGUAAAA-UAAUACGGAAUCGACGUCUCGAAUUGAAAAGCCAG--CAG .((((--((((((..((((((---------....--------....)))))----)))))))....-..........((((....)))).........))))--... ( -24.40) >consensus AAUAG__ACCCCAAC_CCGCA_________CACC________CCCAUGUGGU__GUGGGGGUAAAA_UAAUACGGAAUCAACGUCUCAAAUUGAAAAGCCAG__CAG .......((((((((.((((...........................))))...))))))))...........((.(((((.........)))))...))....... (-12.56 = -13.30 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:10 2006