Locus 1663

Sequence ID 2R_DroMel_CAF1
Location 6,283,073 – 6,283,191
Length 118
Max. P 0.500000
window2780

overview

Window 0

Location 6,283,073 – 6,283,191
Length 118
Sequences 4
Columns 118
Reading direction forward
Mean pairwise identity 94.99
Mean single sequence MFE -27.20
Consensus MFE -22.44
Energy contribution -21.00
Covariance contribution -1.44
Combinations/Pair 1.22
Mean z-score -1.67
Structure conservation index 0.82
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6283073 118 + 20766785
GACAUUUAAUUUGAACACCCAGAAUGGGAGUUUAAGAACGGAUUAACAGAGAUCCGUUUGCUGAAAGCAUUCAUAAUUUAGUUGUGGUUUACUCAAACAAUAUUCAACAAUGUUUACC
((((((....((((((.(((.....))).))))))(((((((((......)))))))))(.((((......((((((...))))))((((....))))....)))).))))))).... ( -26.20)
>DroSec_CAF1 25626 115 + 1
GACAUUUAAUUUGAA---CCAGAAUGGGAGUUUAAGAACGGAUUAACAGAAAUCCGUUUGCUGAAAGCAUUCAUAAUUUAGUUGUGGUUUACUCGAACAAUGUUUAACAAUGUUUACC
...........((((---(((.(((..(((((...(((((((((......)))))))))((.....))......))))).))).)))))))...(((((.((.....)).)))))... ( -26.20)
>DroEre_CAF1 25469 115 + 1
GACAUUUAAUUUGAA---CCAGAAUGGGAGUUUAAGAACGGAUUAACAGAGAUCCGUUUGCUGAAAGCAUUUAUAAUUUAGUUGUGGUUUACUCGAACAAUGUUCGGCAAUGUUUACC
((((((.....((((---(((.(((..(((((((((((((((((......)))))))))((.....))..))).))))).))).))))))).((((((...)))))).)))))).... ( -29.20)
>DroYak_CAF1 28915 115 + 1
GACAUUUAAUUUGAA---CCAGAAUGGGAGUUUAAGAACGGAUUAACAGAGAUCCGUUUGCUGAAAGCAUUUAUAAUUUAGUUGUGGUUUACUCGAACAAUGUUCAGCAGUGUUUACC
((((((.....((((---(((.(((..(((((((((((((((((......)))))))))((.....))..))).))))).))).)))))))...((((...))))...)))))).... ( -27.20)
>consensus
GACAUUUAAUUUGAA___CCAGAAUGGGAGUUUAAGAACGGAUUAACAGAGAUCCGUUUGCUGAAAGCAUUCAUAAUUUAGUUGUGGUUUACUCGAACAAUGUUCAACAAUGUUUACC
((((((...............(((((....((((.(((((((((......)))))))))..))))..)))))........((((..((((....))))......)))))))))).... (-22.44 = -21.00 +  -1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:07 2006