Locus 1661

Sequence ID 2R_DroMel_CAF1
Location 6,280,062 – 6,280,159
Length 97
Max. P 0.736353
window2774

overview

Window 4

Location 6,280,062 – 6,280,159
Length 97
Sequences 4
Columns 104
Reading direction reverse
Mean pairwise identity 76.95
Mean single sequence MFE -23.38
Consensus MFE -9.01
Energy contribution -9.83
Covariance contribution 0.81
Combinations/Pair 1.27
Mean z-score -3.05
Structure conservation index 0.39
SVM decision value 0.44
SVM RNA-class probability 0.736353
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6280062 97 - 20766785
AAACGUGUG------UGGAUUUAUUUGAAAAUGUACAAAAAUACAAUUGUCAAAU-AAAUUGUAUAAUCUCGAAAUGGGUUGUACUAUUCUAUUCUUUGCAUUU
....((((.------..(((((((((((...((((......))))....))))))-)))))(((((((((......))))))))).............)))).. ( -20.10)
>DroSec_CAF1 22756 85 - 1
AAACGUGUG------UGGAUUUAUUUGAAAAUGCACAAAAGUGCAAUAGUCAAAUCAAAUUGUAUAAUCUCGAAAUGGAG------AU-------UAUACAUUU
.........------..(((((((((((...(((((....)))))....)))))).)))))((((((((((......)))------))-------))))).... ( -25.10)
>DroEre_CAF1 22581 103 - 1
AAACGUGUGCUAGUGUGGAUUUAUUUGAAAUUGUAUGCAAGUGCAAUUGUCAAAU-AAAUUGUAUAAACUCGAAAUGAGGUGUACAAUUCUAUGCUUUGCAUUU
......((((.(((((((((((((((((((((((((....)))))))).))))))-)))(((((((..(((.....))).))))))).))))))))..)))).. ( -31.50)
>DroYak_CAF1 24232 95 - 1
AAACGUGUG--------UGUUUAUUUGGAAUUGUAUAAAAGUCCAAUUGUCAAAU-AAAUUGUAUGAGCUCGAAGUAAGGUGUAAAAUUCUAUUCUUUGCAUUU
...((((..--------.(((((((((((((((.((....)).))))).))))))-))))..))))........((((((.(((......))).)))))).... ( -16.80)
>consensus
AAACGUGUG______UGGAUUUAUUUGAAAAUGUACAAAAGUGCAAUUGUCAAAU_AAAUUGUAUAAUCUCGAAAUGAGGUGUACAAUUCUAUUCUUUGCAUUU
....((((.........(((((((((((((((((((....)))))))).)))))).))))).......(((.....)))...................)))).. ( -9.01 =  -9.83 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:01 2006