Locus 1659

Sequence ID 2R_DroMel_CAF1
Location 6,266,698 – 6,266,796
Length 98
Max. P 0.600088
window2772

overview

Window 2

Location 6,266,698 – 6,266,796
Length 98
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 87.98
Mean single sequence MFE -31.21
Consensus MFE -24.60
Energy contribution -26.10
Covariance contribution 1.50
Combinations/Pair 1.19
Mean z-score -2.26
Structure conservation index 0.79
SVM decision value 0.13
SVM RNA-class probability 0.600088
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6266698 98 - 20766785
AAUUGAGCUGCU---------CGGCUGCUGUUCCUGCUGCCUUUUCCGAUGGCCACAAGCUGAAAAGUAAAUUAACACGGAAAAAGCCAGCCUGAAACAGGAACAGC
.....((((...---------.))))((((((((((((((.(((((((.((.......(((....))).......))))))))).).)))).......))))))))) ( -34.05)
>DroSec_CAF1 9785 98 - 1
AAUUGAGCUGCU---------CGGUUGCUGUUCCUGCUGCCUUUUCCGAUGGCCACAAGCUGAAAAGUAAAUUAACACGGAAAAAGCCAGCCUGAAACAGGAACAGC
(((((((...))---------)))))((((((((((((((.(((((((.((.......(((....))).......))))))))).).)))).......))))))))) ( -33.45)
>DroSim_CAF1 9991 98 - 1
AAUUGAGCUGCU---------CGGCUGCUGUUCCUGCUGCCUUUUCCGAUGGCCACAAGCUGAAAAGUAAAUUAACACGGAAAAAGCCAGCCUGAAACAGGAACAGC
.....((((...---------.))))((((((((((((((.(((((((.((.......(((....))).......))))))))).).)))).......))))))))) ( -34.05)
>DroEre_CAF1 9452 97 - 1
AAUUGAGCUGCU---------CGGCUGCUGCUCCUGCUGCCUU-UCCGAUGGCCACAAGCUGAAAAGUAAAUUAACACGGAAAAAGCCAGCCUGGAACAGGAACAGC
......((((..---------.((((((.((....)).)).((-((((.((.......(((....))).......)))))))).))))..((((...))))..)))) ( -27.74)
>DroYak_CAF1 10628 98 - 1
AAUUGAGCUGCU---------CGGCUGCUGUUCCUGCUGCCUUUUCCGAUGGCCACGAGCUGAAAAGUAAAUUAACACGGAAAAAGCCAGCCUGAAACAAGAACAGC
.....((((...---------.))))(((((((..(((((.(((((((.((.......(((....))).......))))))))).).)))).........))))))) ( -28.14)
>DroAna_CAF1 8682 101 - 1
AAUUGAGCUGCAGUGCUGGCCUGGCUGUCGUUUCUGCAGC------UGCUGGCCACAAGCUGAAAAGUAAAUUAACACGGAAAGAGCGCAUCUGAAACUCGACCAGC
..(((((...(((((((((((.((((((.......)))))------)...)))))...(((....)))...................))).)))...)))))..... ( -29.80)
>consensus
AAUUGAGCUGCU_________CGGCUGCUGUUCCUGCUGCCUUUUCCGAUGGCCACAAGCUGAAAAGUAAAUUAACACGGAAAAAGCCAGCCUGAAACAGGAACAGC
.....(((((...........)))))((((((((((((((.(((((((.((.......(((....))).......))))))))).)).))).......))))))))) (-24.60 = -26.10 +   1.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:59 2006