Locus 1656

Sequence ID 2R_DroMel_CAF1
Location 6,259,087 – 6,259,184
Length 97
Max. P 0.530532
window2764

overview

Window 4

Location 6,259,087 – 6,259,184
Length 97
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 81.24
Mean single sequence MFE -33.95
Consensus MFE -21.12
Energy contribution -21.88
Covariance contribution 0.76
Combinations/Pair 1.12
Mean z-score -1.60
Structure conservation index 0.62
SVM decision value -0.01
SVM RNA-class probability 0.530532
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6259087 97 - 20766785
UACACAGAGU----GUGGU--CCACAAAGG-AA----CGUCGGGAUGUGCCUGUA--GCAUUCGGUUGCACCACAAUCCAGGCUGCAGGCCACUAAAUUGUGGCACCAGC
.((((...))----))(((--((((((...-.(----(((....))))(((((((--((....(((((.....)))))...))))))))).......)))))).)))... ( -35.20)
>DroSec_CAF1 2323 97 - 1
UACACAGAGU----GUGGU--CCACAAAGG-AA----CGCCGGGAUGUGCCAGUA--GCAUUCGGUUGCACCACAAUCCAGGCUGCAGGCCACUAAAUUGUGGCACCAGC
......((.(----(((((--((.....))-).----.(((((.((((.......--)))))))))....))))).))...((((...(((((......)))))..)))) ( -31.70)
>DroSim_CAF1 2307 97 - 1
UACACAGAGU----GUGGU--CCACAAAGG-AA----CGCCGGGAUGUGCCAGUA--GCAUUCGGCUGCACCACAAUCCAGGCUGCACGCCACUAAAUUGUGGCACCAGC
........((----(((.(--((.....))-).----)(((.(((((((...(((--((.....)))))..))).)))).))).))))(((((......)))))...... ( -36.00)
>DroEre_CAF1 2291 86 - 1
UACACCGAGU----GU-------ACAAGGAAAA----GGCCGGGAUGUGCCAGUA--G-------CUGCACCACAAUCCAGGCUGCAGGCCACUAAAUUGUGGCACCAGC
(((((...))----))-------)...((....----((((.((((((((.....--.-------..))))....)))).))))....(((((......))))).))... ( -28.10)
>DroYak_CAF1 3039 97 - 1
UACACAGAGU----UUGGC--CCACAAAGG-AA----CGCCGGGAAGUGCCAGUA--GCUCUCAGCUGCACCACAAUCCGGGCUGCAGGCCACUAAAUUGUGGCACCAGC
..........----..(..--((.....))-..----).(((((..(((...(((--((.....)))))..)))..)))))((((...(((((......)))))..)))) ( -32.80)
>DroAna_CAF1 2191 108 - 1
UACACUGUACACUGGUGGCCGCCACAAUGG-AGGUGCUGUCAGGAGAGGCCGGCAUCGCAUC-CGAUGCACCACAAUCCGGGCUGCAGGCCACUAAAUUGUGGCUCCAGC
....(((..((((((((((((((.......-.)))((.(((.(((..(....((((((....-))))))....)..))).))).)).))))))))....)))....))). ( -39.90)
>consensus
UACACAGAGU____GUGGU__CCACAAAGG_AA____CGCCGGGAUGUGCCAGUA__GCAUUCGGCUGCACCACAAUCCAGGCUGCAGGCCACUAAAUUGUGGCACCAGC
..............((((...))))...((........(((.(((((((...(((..((.....)))))..))).)))).))).....(((((......))))).))... (-21.12 = -21.88 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:50 2006