Locus 1652

Sequence ID 2R_DroMel_CAF1
Location 6,247,249 – 6,247,341
Length 92
Max. P 0.655365
window2760

overview

Window 0

Location 6,247,249 – 6,247,341
Length 92
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 79.08
Mean single sequence MFE -22.39
Consensus MFE -7.44
Energy contribution -8.84
Covariance contribution 1.40
Combinations/Pair 1.09
Mean z-score -2.07
Structure conservation index 0.33
SVM decision value 0.26
SVM RNA-class probability 0.655365
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6247249 92 - 20766785
UAAAAAUUUGUCAAUCCAAUUUG--------GGUUGACAAGUUAUACUGACGACAGUUUAGAAAAGUUGUUGUGGUCCCUAGAAUGGAUGUGUUUUUUUU
....(((((((((((((.....)--------))))))))))))((((..((((((..((....))..)))))).((((.......))))))))....... ( -25.70)
>DroSec_CAF1 7501 83 - 1
UAAAAAUUUGUCAAGCCAAUUUU--------GGUUGACAAGUUAUACUGA---CAGUUCAGAAAAGUUGUUGUGGUCCCUACAAUGG---UGUUU---UU
....((((((((((.(((....)--------))))))))))))...((((---....))))(((..(..((((((...))))))..)---..)))---.. ( -21.30)
>DroSim_CAF1 11328 83 - 1
UAAAAAUUUGUCAAGCCAAUUUG--------GGUUGACAAGUUAUACUGA---CAGUUCAGAAAAGUUGUUGUGGUCCCUACAAUGG---UGUUU---UU
....((((((((((.((.....)--------).))))))))))...((((---....))))(((..(..((((((...))))))..)---..)))---.. ( -23.30)
>DroEre_CAF1 7548 91 - 1
UAAAAAAUUGCCAAGCCAACUGGAAUAUGCCGAUUGACAAGUUAUACUGACGGCACUCUAGACAAGUU---GUGGUCCCUACAAUGG---ACUUC---UU
............(((((..(((((...(((((..................))))).)))))....(((---((((...)))))))))---.))).---.. ( -17.67)
>DroYak_CAF1 16768 94 - 1
UAAAAAGUUGUCAAGCUGACUUGAAGCUGUCGAUUGACAAGUUAUACUGACGGCACUCUGGAAAAGUUGUUGUGGUCCCUACAAUGG---ACUUU---UU
......(((((((((((.......))))(((....))).........)))))))......(((((((..((((((...))))))..)---.))))---)) ( -24.00)
>consensus
UAAAAAUUUGUCAAGCCAAUUUG________GGUUGACAAGUUAUACUGACG_CAGUUUAGAAAAGUUGUUGUGGUCCCUACAAUGG___UGUUU___UU
....((((((((((.(...............).))))))))))...((((.......))))......((((((((...)))))))).............. ( -7.44 =  -8.84 +   1.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:46 2006