Locus 165

Sequence ID 2R_DroMel_CAF1
Location 1,425,677 – 1,425,783
Length 106
Max. P 0.832424
window367

overview

Window 7

Location 1,425,677 – 1,425,783
Length 106
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 80.03
Mean single sequence MFE -36.10
Consensus MFE -23.34
Energy contribution -25.06
Covariance contribution 1.72
Combinations/Pair 1.10
Mean z-score -1.96
Structure conservation index 0.65
SVM decision value 0.72
SVM RNA-class probability 0.832424
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1425677 106 - 20766785
UUUUCCGUUCCAGGAAACGCAGCCAAGUGUUGGUCGACAUUUACACGCCGCUUUCGACUGGCGGAGCUUGGCUUUUGUCUUAAGCAA--------------GCCUCUGGCCGGUUGCUUC
.(((((......))))).(((((((((((((....)))))))....((((((.......)))((((((((.(((.......))))))--------------).))))))).))))))... ( -36.50)
>DroSec_CAF1 44116 106 - 1
UUUUCCGUUCCAGGAAACGCAGCCAAGUGUUGGCCGACAUUUACACGCCGCUUUCCACUGGCGGCGCUUGGCUUUUGUCUUAAGCAA--------------GCCCCUGACCGGUUGCUCC
.(((((......))))).(((((((((((((....)))))))....((((((.......))))))(((((.(((.......))))))--------------))........))))))... ( -38.10)
>DroSim_CAF1 49182 95 - 1
UUUUCCGUUCCAGGAAACGCAGCCAAGUGUUGGCCGACAUUUACACGCCGCUUUCCACUGGCGGCGCUUGGCUUUUGUCUUAAGCA-------------------------GGUUGCUCC
.(((((......))))).(((((((((((((....)))))))....((((((.......))))))(((((((....)))..)))).-------------------------))))))... ( -36.40)
>DroEre_CAF1 42244 118 - 1
UUU-CCUUGUCAGGAAACGCAGCCAAGUGUUGGCCGACAUUUACACGCUGCUUUCGACUGAUGUUGCUUGGCCUUUGUCUUAAGCAAUCCCGUCGCCUCCAGCCCC-GACUGCUUGCUCC
(((-(((....)))))).((((.((((((((....)))))))....((((....((((.(..(((((((((........)))))))))..)))))....))))...-).))))....... ( -32.20)
>DroYak_CAF1 46837 120 - 1
UUUACCUUUCCAGGAAACGCAGCCAAUUGGUGGCCGACAUUUACACGCUGCUUUCGACUGGCGUAGCUUGGCUUUUGUCUUAAGCUAUCCCUUUGCCUUCAGCCCCUGGCUGGUAGCUCC
.(((((...(((((....(((((.....((((.....)))).....)))))....((..((((.((..((((((.......))))))...)).)))).))....)))))..))))).... ( -37.30)
>consensus
UUUUCCGUUCCAGGAAACGCAGCCAAGUGUUGGCCGACAUUUACACGCCGCUUUCGACUGGCGGAGCUUGGCUUUUGUCUUAAGCAA______________GCCCCUGACCGGUUGCUCC
.(((((......))))).(((((((((((((....)))))))....((((((.......))))))(((((((....)))..))))..........................))))))... (-23.34 = -25.06 +   1.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:42 2006