Locus 1647

Sequence ID 2R_DroMel_CAF1
Location 6,218,658 – 6,218,765
Length 107
Max. P 0.624996
window2752

overview

Window 2

Location 6,218,658 – 6,218,765
Length 107
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 86.60
Mean single sequence MFE -27.38
Consensus MFE -19.66
Energy contribution -21.43
Covariance contribution 1.78
Combinations/Pair 1.04
Mean z-score -3.09
Structure conservation index 0.72
SVM decision value 0.19
SVM RNA-class probability 0.624996
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6218658 107 - 20766785
AAUACCGAAAGAAUCGAAAGAAGAAAAGUCUCCAUUGUUGUUGCUGAUGCUGUAGUACUCGUACUUUGCCAAAGGCAGAACAGCAACAAGCAGCUACAAAUGCAAAC
.....(....)..((....)).............((((.((((((..((((((.(((....)))((((((...))))))))))))...)))))).))))........ ( -30.40)
>DroSec_CAF1 49681 107 - 1
AAUACCGAAAGAAUCGAAAGAAGAAAAGUCUCCAUUGUUGUUGCUGAUGCUGUAGUACUCAUACUUAGCCAAAGGCAGAACAGCAACAAGCAGCUACAAAUGCAAAC
.....(....)..((....)).............((((.((((((..((((((((((....))))..(((...)))...))))))...)))))).))))........ ( -27.00)
>DroSim_CAF1 51150 107 - 1
AAUACCGAAAGAAUCGAAAGAAGAAAAGUCUCUAUUGUUGUUGCUGAUGCUGUAGUACUCAUACUUAGCCAAAGGCAGAACAGCAACAAGCAGCUACAAAUGCAAAC
.....(....)..((....))(((......))).((((.((((((..((((((((((....))))..(((...)))...))))))...)))))).))))........ ( -27.10)
>DroEre_CAF1 52060 107 - 1
AAUACCGAGAGAAUCGAAAGAAGAAAAGUCUCCAUUGUUGCUGCUGAUGCUGUAGUACUCAUACUUUGCCAAAGGCUGAACAGCAACAAGCAGCUACAAAUGCAACU
......(.((((.((....)).......))))).((((.((((((..((((((((((....))))..(((...)))...))))))...)))))).))))........ ( -29.90)
>DroYak_CAF1 53008 107 - 1
AAUACCAAAAGAAUCGAAAGAAGAAAAGUCUUCAUUGUUGUUGCUGAUGCUGUACUACUCAUACUUCGCCAAAGGCGGAACAGCACCAAGCAGCUACAAAUGCAAAC
...................(((((....))))).((((.((((((..((((((...........((((((...))))))))))))...)))))).))))........ ( -29.30)
>DroAna_CAF1 60413 91 - 1
AAUGUUGA-ACAAUCGAAGGAA-----GUUUCCUCUGCUUCUGCUGA------ACU----AUACUUUGCCAACGGCAGAAAAGCAACAAGCAGCUACAAAUGCAAAC
..(((((.-....(((..((((-----((.......))))))..)))------...----....((((((...))))))....))))).(((........))).... ( -20.60)
>consensus
AAUACCGAAAGAAUCGAAAGAAGAAAAGUCUCCAUUGUUGUUGCUGAUGCUGUAGUACUCAUACUUUGCCAAAGGCAGAACAGCAACAAGCAGCUACAAAUGCAAAC
.............((....)).............((((.((((((..((((((((((....))))..(((...)))...))))))...)))))).))))........ (-19.66 = -21.43 +   1.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:39 2006