Locus 1645

Sequence ID 2R_DroMel_CAF1
Location 6,204,689 – 6,204,786
Length 97
Max. P 0.622039
window2750

overview

Window 0

Location 6,204,689 – 6,204,786
Length 97
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 87.83
Mean single sequence MFE -24.14
Consensus MFE -19.38
Energy contribution -19.98
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -1.51
Structure conservation index 0.80
SVM decision value 0.18
SVM RNA-class probability 0.622039
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6204689 97 + 20766785
CUUUAGAACUGUUCAUCUCACUCGAGGAGAAGUUGCCUACUUAACAUGGCCACUUUCGGCCCUCUUU------UGCAGAUUGCCAAAGCAAUUUGAAUUAGGU
......((((..((..(((....)))..))))))(((((........((((......))))......------..((((((((....))))))))...))))) ( -24.90)
>DroSec_CAF1 35840 97 + 1
CUUUAGAACUGUUCAUCUCACUCGAGGAGAAGUUGCCUACUUAACAUGGCCACUUUCGGCCCUCUUU------UGCAGAUAGCCAAAGCAAUUUGAAUUAGGU
......((((..((..(((....)))..))))))(((((........((((......))))......------..(((((.((....)).)))))...))))) ( -20.80)
>DroSim_CAF1 37239 97 + 1
CUUUAGAACUGUUCAUCUCACUCGAGGAGAAGUCGCCUACUUAACAUGGCCACUUUCGGCCCUCUUU------UGCAGAUAGCCAAAGCAAUUUGAAUUAGGU
.....((....(((..(((....)))..))).))(((((........((((......))))......------..(((((.((....)).)))))...))))) ( -20.50)
>DroEre_CAF1 38547 97 + 1
CUUUAGAGCUGUUCAUCUCGCUCGAGUGGAAGUUGCCUACUUAACAUGGCUACUUUCAGCCCUCUUU------UCCAGAUUGCCAAGGCAAUUUGAAUUAGGU
.....((((..........))))((((((((((.(((..........))).)))))))...)))...------..((((((((....))))))))........ ( -28.40)
>DroYak_CAF1 39056 94 + 1
CUUUAGAACUGA---------GUGAGGAGAAGUUGCCUACUUAACAUGGCUACUUUCAGUCCUCUUUUGCUUUUGCAGAUUGCCAAAGCAAUUUGAAUUAGGU
........((((---------..((((((((((.(((..........))).)))))...)))))..(((((((.((.....)).)))))))......)))).. ( -26.10)
>consensus
CUUUAGAACUGUUCAUCUCACUCGAGGAGAAGUUGCCUACUUAACAUGGCCACUUUCGGCCCUCUUU______UGCAGAUUGCCAAAGCAAUUUGAAUUAGGU
........(((............((((.(((((.(((..........))).)))))....))))...........((((((((....))))))))...))).. (-19.38 = -19.98 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:37 2006