| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 6,200,956 – 6,201,047 |
| Length | 91 |
| Max. P | 0.613794 |
| Location | 6,200,956 – 6,201,047 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 68.66 |
| Mean single sequence MFE | -28.46 |
| Consensus MFE | -5.53 |
| Energy contribution | -5.17 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.40 |
| Mean z-score | -2.31 |
| Structure conservation index | 0.19 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.613794 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6200956 91 - 20766785 GCAACACAAACACAUGGACAGGCACACGCAUACAUUAGCUCCACAUGGCUCUCUGUCUCUGUGUG------UGUAUGUAUGUGUGUUUGUGAAUGGG ....((((((((((((.(((.(((((((((.(((..((((......))))...)))...))))))------))).))).))))))))))))...... ( -36.20) >DroPse_CAF1 28842 83 - 1 GCCACAGU-AUACUUACACGCACACAGCCAUGCUUCAGCUCCCCAU-------UCCCCAUUCAAG------UGUGUGUGAGUGUGUGUGUGAAUGGG .(((..(.-...)((((((((((((.(((((((((...........-------.........)))------)))).))..)))))))))))).))). ( -23.75) >DroSec_CAF1 32112 81 - 1 GCAACGCAAACACAUGGACAGGCACACGCAUACAUUAGCUCCACAUGGCUCUCUGUCUCUGUGUG------UG----------UGUUUGUGAAUGGG ....((((((((((((.(((((.(((.((........)).((....)).....))).))))).))------))----------))))))))...... ( -26.30) >DroSim_CAF1 33522 83 - 1 GCAACACAAACACAUGGACAGGCACACGCAUACAUUAGCUCCACAUGGCUCUCUGUCUCUGUGUG------UGUA--------UGUUUGUGAAUGGG ............((..((((.(((((((((.(((..((((......))))...)))...))))))------))).--------))))..))...... ( -25.90) >DroEre_CAF1 34754 92 - 1 GCAACACAAACACAUGGACAGGCACACGCAUACAUUAGCUCCACAUGGCUCGCUGUGU----GU-UGCGUGUGUGUGUGUGUGCGCUUGUGAAUGGG ............(((..((((((.(((((((((((..((..(((((((....))))))----).-.))....))))))))))).))))))..))).. ( -40.90) >DroPer_CAF1 27700 82 - 1 GCCACAGU-AUACUUACACGCACACAGCCAUGCUUCAGCUCCCCAUUCCCCAUUCCCCAUUCAAG------UGUGU--------GUGUGUGAAUGGG .(((..(.-...)(((((((((((((.....((....))..................(......)------)))))--------)))))))).))). ( -17.70) >consensus GCAACACAAACACAUGGACAGGCACACGCAUACAUUAGCUCCACAUGGCUCUCUGUCUCUGUGUG______UGUGU_______UGUUUGUGAAUGGG ............(((..(((((((...........................................................)))))))..))).. ( -5.53 = -5.17 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:35 2006