Locus 1642

Sequence ID	2R_DroMel_CAF1
Location	6,198,155 – 6,198,248
Length	93
Max. P	0.868318

overview

Window 7

Location	6,198,155 – 6,198,248
Length	93
Sequences	5
Columns	93
Reading direction	reverse
Mean pairwise identity	85.90
Mean single sequence MFE	-18.78
Consensus MFE	-14.38
Energy contribution	-14.38
Covariance contribution	-0.00
Combinations/Pair	1.18
Mean z-score	-2.02
Structure conservation index	0.77
SVM decision value	0.86
SVM RNA-class probability	0.868318
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6198155 93 - 20766785
AAUAGAAUUUAUUUACAUUAAAUUCCAUUUAUGGCCGACAUGGGCAUUCAGUCUUCUCGUUCGGCACAUAAAUAACCCUGGGCCCCUUAAUAU
....(((((((.......))))))).((((((((((((.(((((.(........))))))))))).))))))).................... ( -20.20)
>DroSec_CAF1 29367 93 - 1
AAUAGAAUUUAUUUACAUUAAAUUCCAUUUAUGGCCGACAUGGGCAUUCAGUCUUCUCGUUCGGCACAUAAAUAACCCUGGGCCCCUCAAUAU
....(((((((.......))))))).((((((((((((.(((((.(........))))))))))).))))))).....((((...)))).... ( -20.60)
>DroSim_CAF1 29304 93 - 1
AAUAGAAUUUAUUUACAUUAAAUUCCAUUUAUGGCCGACAUGGGCAUUCAGUCUUCUCAUUCGGCACAUAAAUAACCCUGGGCCCCUCAAUAU
....(((((((.......))))))).((((((((((((.(((((.(........))))))))))).))))))).....((((...)))).... ( -21.00)
>DroEre_CAF1 32004 76 - 1
AAUAGAAUUCA----------------UUUAUGGCCGGCAUGGUCGUUCUGUCUUUUCAUGUGGCACAUAAAUAAACCUG-GCCCCUCAAUAU
..........(----------------((((((((((.(((((.............))))))))).))))))).......-............ ( -15.32)
>DroYak_CAF1 32503 92 - 1
AAUAGAAUUUAUUUACAUUUAAUUUCGUUUAUGGCCGACAUGGGCAUUCAGUCUUCUCAUUUGGCACAUAAAUAACCCUG-GCCCCUCGAUAU
....(((.(((........))).)))((((((((((((.(((((.(........))))))))))).))))))).......-............ ( -16.80)
>consensus
AAUAGAAUUUAUUUACAUUAAAUUCCAUUUAUGGCCGACAUGGGCAUUCAGUCUUCUCAUUCGGCACAUAAAUAACCCUGGGCCCCUCAAUAU
..........................((((((((((((.(((((...........)))))))))).))))))).................... (-14.38 = -14.38 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:34 2006