| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 6,193,823 – 6,193,922 |
| Length | 99 |
| Max. P | 0.852605 |
| Location | 6,193,823 – 6,193,922 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 88.46 |
| Mean single sequence MFE | -19.64 |
| Consensus MFE | -16.95 |
| Energy contribution | -16.84 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.79 |
| SVM RNA-class probability | 0.852605 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6193823 99 - 20766785 AAAUAAUAAUAGGCUUAUAUACAACCUUAAUAGCUAUGUUAUUUAAAUAGCUAAAAGGCA-----CUACUAUAUGUAUCUGGGCCAAUAAAUAUGAAUUCAAUA ...........((((((.(((((.......(((((((.........)))))))..((...-----...))...))))).))))))................... ( -19.70) >DroSec_CAF1 24982 104 - 1 AAAUAAUAAUAGGCUUAUAUACAACCUUAAUAGCUCUAUUAUUUAAAUAGCUAAAGGGCAGUCCACAAAUAUAUGUAUGUGGGUCAAUGAGUAUGAAUUUAAUA ...........((((((((((((.((((..(((((.............)))))))))...(....).......))))))))))))................... ( -19.22) >DroSim_CAF1 24944 104 - 1 AAAUAAUAAUAGGCUUAUAUACAACCUUAAUAGCUCUACUAUUUAAAUAGCUAAAGGGCAGUCCACAAAUAAGUGUAUGUGGGUCAAUGAAUAUGAAUUUAAUA ...........((((((((((((..((((...(((((.((((....))))....))))).(....)...))))))))))))))))................... ( -20.00) >consensus AAAUAAUAAUAGGCUUAUAUACAACCUUAAUAGCUCUAUUAUUUAAAUAGCUAAAGGGCAGUCCACAAAUAUAUGUAUGUGGGUCAAUGAAUAUGAAUUUAAUA ...........((((((((((((.((((..(((((.............))))).))))...............))))))))))))................... (-16.95 = -16.84 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:33 2006