Locus 1640

Sequence ID 2R_DroMel_CAF1
Location 6,193,157 – 6,193,256
Length 99
Max. P 0.912634
window2745

overview

Window 5

Location 6,193,157 – 6,193,256
Length 99
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 79.81
Mean single sequence MFE -25.35
Consensus MFE -17.44
Energy contribution -17.83
Covariance contribution 0.39
Combinations/Pair 1.11
Mean z-score -2.12
Structure conservation index 0.69
SVM decision value 1.08
SVM RNA-class probability 0.912634
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6193157 99 - 20766785
ACUCUGGAUGCUUGGACAUGCCUCAUUAGCCAAAGUGCCACAAACUUUGGCUCCUCUAAUUGAAUUAACACUAAUGAGGUCUCUCGCACACUCUCGAAC
..((.((((((..(((...(((((((((((((((((.......))))))))...((.....))........))))))))).))).)))...))).)).. ( -27.40)
>DroPse_CAF1 21013 80 - 1
-----GGGGGCCCGGGCAUGGCUCAUUAGCCAAAGUGCCAUCAACUUUGGGUCGUCUAAUUGAAUCAACACUAAUGGGU-----AGGACA---------
-----....((((((((((((((....)))))...)))).......(((..(((......)))..)))......)))))-----......--------- ( -21.50)
>DroSim_CAF1 24289 99 - 1
GCUCUGGAUGCUUGGACAUGCCUCAUUAGCCAAAGUGCCACAAACUUUGGCUCCUCUAAUUGAAUUAACACUAAUGAGGUCUCUCGCACACUCUCGAAC
..((.((((((..(((...(((((((((((((((((.......))))))))...((.....))........))))))))).))).)))...))).)).. ( -27.40)
>DroEre_CAF1 27197 99 - 1
GUUCUGGAUGCUUGGACAUGCCUCAUUAGCCAAAGUGCCACAAACUUUGGCUCCCCUAAUUGAAUUAACACUAAUGAGGUCUCUCGCACACUCUCCAGC
...((((((((..(((...(((((((((((((((((.......))))))))((........))........))))))))).))).))).....))))). ( -29.60)
>DroYak_CAF1 27466 99 - 1
GUGCUGGAUGCUUGGACAUGCCUCAUUAGCCAAAGUGCCACAAACUUUGCCUCCUCUAAUUGAAUUAACACUAAUGAGGUCUCUCGCACACUCUCCAAC
((((.(((((......)).((((((((((.((((((.......)))))).....((.....)).......)))))))))).))).)))).......... ( -24.10)
>DroPer_CAF1 21665 80 - 1
-----GGGGGCCCGGGCAUGCCUCAUUAGCCAAAGUGCCAUCAACUUUGGGUCGUCUAAUUGAAUCAACACUAAUGGGU-----AGGACA---------
-----((....)).(...((((.(((((((((((((.......))))))).(((......))).......)))))))))-----)...).--------- ( -22.10)
>consensus
G_UCUGGAUGCUUGGACAUGCCUCAUUAGCCAAAGUGCCACAAACUUUGGCUCCUCUAAUUGAAUUAACACUAAUGAGGUCUCUCGCACACUCUC_AAC
...................(((((((((((((((((.......)))))))....((.....)).......))))))))))................... (-17.44 = -17.83 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:32 2006