| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 1,425,536 – 1,425,637 |
| Length | 101 |
| Max. P | 0.717210 |
| Location | 1,425,536 – 1,425,637 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 85.00 |
| Mean single sequence MFE | -31.98 |
| Consensus MFE | -21.78 |
| Energy contribution | -22.82 |
| Covariance contribution | 1.04 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.717210 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1425536 101 + 20766785 CCUCGGGAGCGUAUACGUAACGU------------AACGGAAACGGAAACAGAGCGAUAAAGUUCUGUUAGCGUAGUGUA-------CACCAACCCUCAGCAGCACCCGCGAUGUUGUAA ....(((.(.((((((...((((------------..((....))..((((((((......)))))))).)))).)))))-------).)...)))...((((((.......)))))).. ( -33.20) >DroSec_CAF1 43968 108 + 1 ACUCGGGAGCGUAUACGUAACGU------------AACGGAAACGGAAACAGAGCGAUAAAGUUCUGUUAGCGUAGUGUAUGGUGAACACCAACCCUCAGCAGCACCCGCGAUGUUGUAA .(.((((.((((((((...((((------------..((....))..((((((((......)))))))).)))).))))))(((....)))...........)).)))).)......... ( -36.30) >DroSim_CAF1 49034 108 + 1 ACUCCGGAGCGUAUACGUAACGU------------AACGGAAACGGAAACAGAGCGAUAAAGUUCUGUUAGCGUAGUGUACGGUGAACACCAACCCUCAGCAGCACCCGCGAUGUUGUAA ......(((.((((((...((((------------..((....))..((((((((......)))))))).)))).))))))(((....)))....))).((((((.......)))))).. ( -34.80) >DroEre_CAF1 42100 113 + 1 ACUCGGGAACGUAUACGUAACGCAGAGGAAACGGAAACGGAAACGGAAUCAGAGCGAUAAAGUUCUGUUAGCGUAGUGCA-------CACCAACCCUUAGCAGCACCCGCGAUGUUGUAA .(.((((.(((....)))...((.((((...((....)).....((...((((((......))))))...((.....)).-------..))...)))).))....)))).)......... ( -31.10) >DroYak_CAF1 46710 96 + 1 ACUCGGGAACGUAUACGUAAC-----------------GAAAACGGAAUCAGAGCGAUAAAGUUCUGUUAGCAUAGUGUA-------CACCAACUCACAGCAUCACCCGCGGUGUUGUAA ....((....((((((....(-----------------(....))(...((((((......))))))....)...)))))-------).)).....((((((((......)))))))).. ( -24.50) >consensus ACUCGGGAGCGUAUACGUAACGU____________AACGGAAACGGAAACAGAGCGAUAAAGUUCUGUUAGCGUAGUGUA_______CACCAACCCUCAGCAGCACCCGCGAUGUUGUAA ....(((......(((((...................((....))..((((((((......)))))))).)))))(((.........)))...)))...((((((.......)))))).. (-21.78 = -22.82 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:41 2006