Locus 1633

Sequence ID 2R_DroMel_CAF1
Location 6,160,127 – 6,160,225
Length 98
Max. P 0.624106
window2734

overview

Window 4

Location 6,160,127 – 6,160,225
Length 98
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 73.21
Mean single sequence MFE -23.35
Consensus MFE -17.96
Energy contribution -18.27
Covariance contribution 0.31
Combinations/Pair 1.26
Mean z-score -0.63
Structure conservation index 0.77
SVM decision value 0.19
SVM RNA-class probability 0.624106
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6160127 98 - 20766785
UGCCAUGUACGAUGUCACCGACAGGAUCAUUACCUUCCUAGGUGGCAAGAAGCCAGAUCAUGCGGUGAGUUUAG-AUCUUUAAUUACCUGC-----AGAGUGAA
.((..((((.(...((((((.((.((((...((((....))))(((.....))).)))).))))))))..((((-....))))...).)))-----)..))... ( -25.70)
>DroGri_CAF1 172153 94 - 1
CGCCAUGUACGAUGUGACAGACAGACUCAUUGUGUUCAUGGGCGGCAAGAAGCCAGAUCAUGCUGUAAGAUUCCCAUAUUUGAUAACA---AUUU--CA-----
..((((((((((((.(.(.....).).)))))))..)))))((((((.((.......)).))))))......................---....--..----- ( -19.10)
>DroSec_CAF1 150317 88 - 1
UGCCAUGUACGAUGUCACCGACAGGAUCAUCACCUUCCUAGGUGGCAAGAAGCCAGAUCAUGCGGUGAGUUUAG-AACUUUAAUUUUCU---------------
..............((((((.((.((((...((((....))))(((.....))).)))).))))))))......-..............--------------- ( -24.30)
>DroSim_CAF1 158349 88 - 1
UGCCAUGUACGAUGUCACCGACAGGAUCAUAACCUUCCUAGGUGGCAAGAAGCCAGAUCAUGCGGUGAGUUUAG-AUCCUUAGCCCUAA---------------
..............((((((.((.((((...((((....))))(((.....))).)))).))))))))......-..............--------------- ( -24.30)
>DroEre_CAF1 154628 78 - 1
UGCCAUGUACGAUGUCACCGACAGGAUCAUCACCUUCCUGGGUGGCAAGAAGCCCGAUCAUGCGGUUA-----G-AUCUUUAAU--------------------
..........(((.(.((((.((.((((...((((....))))(((.....))).)))).)))))).)-----.-)))......-------------------- ( -22.20)
>DroPer_CAF1 143035 89 - 1
UGCCAUGUACGAUGUCACCGACAGGAUCAUUGCGUUCCUGGGCGGCAAGCGACCAGAUCACGCUGUGGGUUUAG-CUAUU-----ACC---AGG-GAAA-----
.((.(((.....((((...))))....))).)).(((((((..(((((((..((((......))).).)))).)-))...-----.))---)))-))..----- ( -24.50)
>consensus
UGCCAUGUACGAUGUCACCGACAGGAUCAUUACCUUCCUAGGUGGCAAGAAGCCAGAUCAUGCGGUGAGUUUAG_AUCUUUAAU_ACC________________
..............((((((.((.((((...((((....))))(((.....))).)))).)))))))).................................... (-17.96 = -18.27 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:22 2006