Locus 163

Sequence ID 2R_DroMel_CAF1
Location 1,424,842 – 1,424,962
Length 120
Max. P 0.998660
window365

overview

Window 5

Location 1,424,842 – 1,424,962
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 98.00
Mean single sequence MFE -34.70
Consensus MFE -33.32
Energy contribution -33.20
Covariance contribution -0.12
Combinations/Pair 1.05
Mean z-score -2.17
Structure conservation index 0.96
SVM decision value 3.18
SVM RNA-class probability 0.998660
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1424842 120 + 20766785
AAAUGAAGAUUGGCAUAGCGAGAUAUGUACGUGAUGGGAAUGGAAUGCCGAGCAUAAUAUCGAGCUCCUGCGGCGUGCGAAAUCUUUUCCAAAACAAUAUAUGUCAUGCACAUGCCAAAG
.........(((((((.(((.((((((((.((..((((((.((((((((((((..........))))....)))))......)))))))))..))..)))))))).)))..))))))).. ( -35.00)
>DroSec_CAF1 43266 120 + 1
AAAUGAAGAUUGGCAUAGCGAGAUAUGUACGUGAUGGGAAUGGAAUGCCGAGCAUAAUAUCGAGCUCCUGCGGCGUGCGAAAUCUUUUCCAAAACAAUAUAUGUCAUGCACAUGCCAAAG
.........(((((((.(((.((((((((.((..((((((.((((((((((((..........))))....)))))......)))))))))..))..)))))))).)))..))))))).. ( -35.00)
>DroSim_CAF1 48322 120 + 1
AAAUGAAGAUUGGCAUAGCGAGAUAUGUACGUGAUGGGAAUGGAAUGCCGAGCAUAAUAUCGAGCUCCUGCGGCGUGCGAAAUCUUUUCCAAAACAAUAUAUGUCAUGCACAUGCCAAAG
.........(((((((.(((.((((((((.((..((((((.((((((((((((..........))))....)))))......)))))))))..))..)))))))).)))..))))))).. ( -35.00)
>DroEre_CAF1 41443 120 + 1
AAAUGAAGAUUGGCAUAGCGAGAUAUGUACGUGAUGGGAAUGGAAUGCCGAGCAUAGCAUCGAGCUCCUGCGGUGUGCGAAAUCUUUUCCAAAACAAUAUAUGUCAUGCACAUGCCAAAG
.........(((((((.(((.((((((((.((..((((((.(((((((...)))).((((...((....))...))))....)))))))))..))..)))))))).)))..))))))).. ( -36.00)
>DroYak_CAF1 46030 120 + 1
AAAUGAAGAUUGGCAAAGCGAGAUAUGUACGUGAUGGGAAUGGAAUGCCGAGCAUAAUAUCGAGCUCCUGCGGCGUGCGAAAUCUUUUUCAAAACAAUAUAUGUCAUGCACAUGCCAAGG
.........((((((..(((.(((((((((((..(((((.......(((((........))).)))))))..))))))((((....))))..........))))).)))...)))))).. ( -32.51)
>consensus
AAAUGAAGAUUGGCAUAGCGAGAUAUGUACGUGAUGGGAAUGGAAUGCCGAGCAUAAUAUCGAGCUCCUGCGGCGUGCGAAAUCUUUUCCAAAACAAUAUAUGUCAUGCACAUGCCAAAG
.........(((((((.(((.((((((((.((..((((((.((((((((((((..........))))....)))))......)))))))))..))..)))))))).)))..))))))).. (-33.32 = -33.20 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:40 2006