| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 6,107,368 – 6,107,467 |
| Length | 99 |
| Max. P | 0.542555 |
| Location | 6,107,368 – 6,107,467 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 75.60 |
| Mean single sequence MFE | -17.23 |
| Consensus MFE | -11.27 |
| Energy contribution | -11.43 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.12 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.542555 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6107368 99 + 20766785 GGCUGGAAAUUAUAGCGAACACGGCGACAUUGUUGCGCAAGUGCGUAGAAUUAAUUACCAAAAAAAAAAA-ACAACA------AAAAUUUCAAACCCGAACCGAAA ((.(((.(((((..(((.((...(((.((....)))))..)).))).....))))).)))..........-......------.....(((......))))).... ( -13.20) >DroPse_CAF1 111925 96 + 1 GGCUGGAAAUUAUGGCCAA-GCGGCGACAUUGUUGCGCAAGUGCGUAGAAUUAAUUACCAAAAAAACAUC-AAAACUA--CA-ACAAAUCCAUCCCCAAAG----- ((.((((.......(((..-..))).......((((((....))))))......................-.......--..-.....)))).))......----- ( -17.70) >DroSec_CAF1 116614 105 + 1 GGUUGGAAAUUAUAGCGAACACGGCGACAUUGUUGCGCAAGUGCGUAGAAUUAAUUACCAAAAAAAAAAG-AAAAAAAACCGAAAAAUUUCAAACCCGAACCGAAA ((((.((((((....((.....(....)....((((((....))))))......................-.........))...)))))).)))).......... ( -16.10) >DroYak_CAF1 118465 100 + 1 GGUUGGAAAUUAUAGCGAACACGGCGACAUUGUUGCGCAAGUGCGUAGAAUUAAUUACCACAAAAAAAAAGCACACAAAACA-CAAAAUUUCGAACCGA-----AA ((((.((((((...(((((((.(....)..)))).)))..((((..........................))))........-...)))))).))))..-----.. ( -22.27) >DroAna_CAF1 144205 95 + 1 GGCUGGAAAUUAUGGC---CAUUGCGACAUUGUUGGGCAAGUGCGUAGAAUUAAUUACCAAAAAGAAAAA-AUACA---ACA-GAAUUUUUGGAAUAUAUCCG--- (((((.......))))---).(((((.((((........))))))))).........(((((((......-.....---...-...)))))))..........--- ( -16.43) >DroPer_CAF1 111862 96 + 1 GGCUGGAAAUUAUGGCCAA-GCGGCGACACUGUUGCGCAAGUGCGUAGAAUUAAUUACCAAAAAAACAUC-AAAACUA--CA-CCAAAUCCAUCCCCAAAG----- ((.((((.......(((..-..))).......((((((....))))))......................-.......--..-.....)))).))......----- ( -17.70) >consensus GGCUGGAAAUUAUAGCGAACACGGCGACAUUGUUGCGCAAGUGCGUAGAAUUAAUUACCAAAAAAAAAAA_AAAACAA__CA_AAAAAUUCAAACCCGAAC_____ ...(((.(((((..((.......)).......((((((....))))))...))))).))).............................................. (-11.27 = -11.43 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:13 2006