| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 6,090,497 – 6,090,588 |
| Length | 91 |
| Max. P | 0.500000 |
| Location | 6,090,497 – 6,090,588 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 80.57 |
| Mean single sequence MFE | -19.11 |
| Consensus MFE | -13.30 |
| Energy contribution | -13.63 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.16 |
| Structure conservation index | 0.70 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6090497 91 - 20766785 -----------CGGCCACGCCUCCUUG----CCAUGCUGCAAAC-CCCGAAAACUCCUUCCAUCCCAUUGCCGCCUGGCUACAGUUGCGGCAAAUGAACAAACGCCA -----------.(((.........(((----(......))))..-....................((((((((((((....)))..))))).)))).......))). ( -21.90) >DroSec_CAF1 108280 91 - 1 -----------CGGCCACGCCCCCUUG----CCACCCAGCAAAC-CCCGAAAACUCCUUCCAUGCCAUUGCCGCCUGGCUACAGUUGCGGCAAAUGAACAAACGCCA -----------.(((...((....(((----(......))))..-...(((......)))...))((((((((((((....)))..))))).)))).......))). ( -22.30) >DroSim_CAF1 113353 91 - 1 -----------CGGCCACGCCCCCUUG----CCACCCUGCAAAC-CCCGAAAACUCCUUCCAUGCCAUUGCCGCCUGGCUACAGUUGCGGCAAAUGAACAAACGCCA -----------.(((...((....(((----(......))))..-...(((......)))...))((((((((((((....)))..))))).)))).......))). ( -22.10) >DroEre_CAF1 111642 87 - 1 -----------CUGCCACGCCUCCUUG----CCAA----CAGCC-CCUCAAAACUCCUUCCAUGCCAUUGCCGCCUGGCUACAGUUGCGGCAAAUGAACAAACGCCA -----------(((....((......)----)...----)))..-....................((((((((((((....)))..))))).))))........... ( -15.20) >DroYak_CAF1 109999 86 - 1 -----------CUGCCACGCCUCCCUG----CCAG----CAACU-CC-AAAAACUCCUUCCAUGCCACUGCCGCCUGGCUACAGUUGCGGCAAAUGAACAAACGCCA -----------.((((..((......)----)..(----(((((-..-...............((((........))))...))))))))))............... ( -16.25) >DroPer_CAF1 103619 107 - 1 UGCCACUGCCACUGCCACAACUCCUUCUAUUCCCCCCUCCUCACUCCUCACGCCGCCUUCUGUCUAACUGCCGCCUGGCUACAGUUGCGGCAAAUGAACAAACGCCA .((....((....))....................................(((((...((((......(((....))).))))..)))))............)).. ( -16.90) >consensus ___________CGGCCACGCCUCCUUG____CCACCCUGCAAAC_CCCGAAAACUCCUUCCAUGCCAUUGCCGCCUGGCUACAGUUGCGGCAAAUGAACAAACGCCA ...................................................................((((((((((....)))..))))))).............. (-13.30 = -13.63 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:06 2006