Locus 1622

Sequence ID 2R_DroMel_CAF1
Location 6,087,014 – 6,087,104
Length 90
Max. P 0.807557
window2716

overview

Window 6

Location 6,087,014 – 6,087,104
Length 90
Sequences 6
Columns 90
Reading direction forward
Mean pairwise identity 85.46
Mean single sequence MFE -14.65
Consensus MFE -13.50
Energy contribution -13.50
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.56
Structure conservation index 0.92
SVM decision value 0.64
SVM RNA-class probability 0.807557
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6087014 90 + 20766785
AACAUAAAAUAAUAAUAAAAAUGCCGGCCGCUUUAAGCGGCUGAUUUCUGUGCCCUUCUAUCCGCCAUCUCUGCAUCUUCUUUUCGUUUC
....................(((((((((((.....))))))).....((.((..........)))).....)))).............. ( -15.80)
>DroSec_CAF1 104712 90 + 1
AACAUAAAAUAAUAAUAAAAAUGCCGGCCGCUUUAAGCGGCUGAUUUCUGUGCCCUUCUAUCCGCCAUCUCUGCAUCUUCUCUUCGUUUC
....................(((((((((((.....))))))).....((.((..........)))).....)))).............. ( -15.80)
>DroEre_CAF1 108096 87 + 1
AACAUAAAAUAAUAAUAAAAAUGCCGGCCGCUUUAAGCGGCUGAUUUCUGUGCCCGUCUAUCCGCCAUCUCUGCAUCU---CUUCUUUUC
....................(((((((((((.....))))))).....((.((..........)))).....))))..---......... ( -15.80)
>DroYak_CAF1 106385 90 + 1
AACAUAAAAUAAUAAUAAAAAUGCCGGCCGCUUUAAGCGGCUGAUUUCUGUUCCCGUCUAUCCGCCAUCUCUUCAUCUCCUCUUCUUUUC
........................(((((((.....)))))))............................................... ( -13.50)
>DroAna_CAF1 130219 80 + 1
AACAUAAAAUAAUAAUAAAAAUGCCGGCCGCUUCAAGCGGCUGAUUUCUGUUUCUUUCUAUCC-CCAUCC--GU-------AUCCGUAUC
........................(((((((.....)))))))....................-......--..-------......... ( -13.50)
>DroPer_CAF1 100814 77 + 1
AACAUAAAAUAAUAAUAAAAAUGCCGGCCGCUUUAAGCGGCUGAUUUCUGUUUCAUUCUAUCC--CAUUC-----------AUUCGCUUC
........................(((((((.....)))))))....................--.....-----------......... ( -13.50)
>consensus
AACAUAAAAUAAUAAUAAAAAUGCCGGCCGCUUUAAGCGGCUGAUUUCUGUGCCCUUCUAUCCGCCAUCUCUGCAUCU___CUUCGUUUC
........................(((((((.....)))))))............................................... (-13.50 = -13.50 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:05 2006